BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G11970.1

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488039 jgi|Araly1|488039|fgenesh2_kg.6__1173__AT5G11970.1         717    0.0  


> Ahg488039 jgi|Araly1|488039|fgenesh2_kg.6__1173__AT5G11970.1
Length=625

 Score =  717 bits (388),  Expect = 0.0
 Identities = 455/485 (94%), Gaps = 14/485 (3%)
 Strand=Plus/Plus

Query  1    ATATAACGTGGAGCAACAAATTGAGACCAGCTCAAAAGACACGTCCTTTTTTGCGTTACT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATATAGCGTGGAGCAACAAATTGAGACCAGCTCAAAAGACACGTCCTTTTTTGCGTTACT  60

Query  61   ATTATTCTCCTCCTTTCTCTCCAATTATTCTCTGAGCTGTAATAACATAAACaaaaaaaa  120
            |||||||||||| |||||||||||||||||||||||||||||||||    | ||||||||
Sbjct  61   ATTATTCTCCTCTTTTCTCTCCAATTATTCTCTGAGCTGTAATAAC----A-AAAAAAAA  115

Query  121  GATTCTCTCGATCAAACTTGCCGGCGTCCATGGAAGATTTCGGCCGTCAACGACCATACG  180
            ||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||
Sbjct  116  GATTCTCTCGATCAAACTTGCCGGAACCCATGGAAGACTTCGGCCGTCAACGACCATACG  175

Query  181  GAGACGGAGGGATGCAGATCCAGCCTTACCA---CGG-TAATCAAGG---CGGTGATTTC  233
            |||||||||||||||||||||||||||||||   |||    ||  ||   ||| ||||||
Sbjct  176  GAGACGGAGGGATGCAGATCCAGCCTTACCACGGCGGCGCTTC-GGGAACCGGCGATTTC  234

Query  234  AGGAGCTATAGCGCATCGTACGGGACGAGGGAGAACAATATATACGATGTGAAAAAGGAG  293
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  235  AGGAGCTATAGCGCATCGTACGGGACGAGGGACAACAATATATACGATGTGAAAAAGGAG  294

Query  294  AAATCGATAGCAAGATCCAAGTCTTGGGGAATAACGGATCCGGAGCTCCAGAGGAAGAAA  353
            ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct  295  AAATCGATAGCAAGATCCAAGTCGTGGGGGATAACGGACCCGGAGCTCCAGAGGAAGAAA  354

Query  354  CGGGTCGCGAGTTATAAGATGTATGGTGTTGAAGGCAAAGTCAAAGGCTCTTTTAGAAAC  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  355  CGGGTCGCGAGTTATAAGATGTATGGTGTTGAAGGCAAAGTCAAAGGCTCTTTTAGAAAC  414

Query  414  AGTTTCAGATGGCTTAAGCAGAGGTACACACAGGTCGTCTATGGTTGGTGGTGAttc-tt  472
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  415  AGTTTCCGATGGCTTAAGCAGAGGTACACACAGGTCGTCTATGGTTGGTGGTGATTCATT  474

Query  473  ttttc  477
            |||||
Sbjct  475  TTTTC  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25161125220


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5