BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11980.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488040 jgi|Araly1|488040|fgenesh2_kg.6__1174__AT5G11980.1 3027 0.0
> Ahg488040 jgi|Araly1|488040|fgenesh2_kg.6__1174__AT5G11980.1
Length=1837
Score = 3027 bits (1639), Expect = 0.0
Identities = 1777/1842 (96%), Gaps = 16/1842 (1%)
Strand=Plus/Plus
Query 5 GAAAACAAATCACAGAAAC-A-TTTTGATGTTAAGTT-TTTG-AAAAAATCGCGAGTTTC 60
||||||||||||||||||| | ||||||||||| || |||| ||||||||| |||||||
Sbjct 1 GAAAACAAATCACAGAAACAACATTTGATGTTAA-TTATTTGAAAAAAATCGTGAGTTTC 59
Query 61 TGGATC------TGTATACTTTCTTAGAGGAGATTTTGATAGCATCGTTTACAGGAGTAA 114
|||||| ||||||||| ||| ||||||||||||||||||||| | || ||||||
Sbjct 60 TGGATCTGTTGTTGTATACTTCCTTTGAGGAGATTTTGATAGCATCGGCTGCAAGAGTAA 119
Query 115 GATCCGGGAATGGCAATGGAGGTTGGGGAGATGTCTCAGCCGGAGGCGACGGCGAGTCTT 174
|||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GATCTGGAAATGGCAACGGAGGTTGGGGAGATGTCTCCGCCGGAGGCGACGGCGAGTCTT 179
Query 175 CTCTCTCTCGCTTCCGCCACTCAGCAACCGTACGTCTCCGAGCTCCTCTCTTTCACTCTT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTCTCTCGCTTCCGCCACTCAGCAACCGTACGTCTCCGAGCTCCTCTCTTTCACTCTT 239
Query 235 GATCGTCTCCACAAGGAACCGGAGCTGCTTCGAGTGGATGCGGAGCGGATTCAGAGGCAA 294
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GATCGTCTCCACAAGGAACCGGAGCTGCTTCGAGTGGATGCGGAGAGGATTCAGAGGCAA 299
Query 295 ATGCAAGAGGTGGCTGTTGGAAATTACCGCGCGTTTATCACCGCTGCTGATGCTTTGCTT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGCAAGAGGTGGCTGTTGGAAATTACCGCGCGTTTATCACCGCTGCTGATGCTTTGCTT 359
Query 355 GCGATCCGTCAGGAAGTTTCTTCCATTGATAAGCATCTCGAGTCTCTGATTGGCGAAGTC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCGATCCGTCAGGAAGTTTCTTCCATTGATAAGCATCTCGAGTCTCTGATTGGCGAAGTC 419
Query 415 CCAAAACTAACGTCTGGTTGCACTGAATTTATCGATTCTGCTGAGAATATTTTGGAGAAG 474
|||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 420 CCAAAATTAACGTCCGGTTGCACAGAATTTATCGATTCTGCTGAGAATATTCTGGAGAAG 479
Query 475 AGGAAGATGAACCAAGCATTGCTGGCAAATCACAGCACTCTTCTTGACTTGCTTGAGATT 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGAAGATGAACCAAGCTTTGCTGGCAAATCACAGCACTCTTCTTGACTTGCTTGAGATT 539
Query 535 CCTCAGCTTATGGACACATGCGTGAGGAATGGAAATTTTGATGAGGCTCTTGACCTGGAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTCAGCTTATGGACACATGCGTGAGGAATGGAAATTTTGATGAGGCTCTTGACCTGGAA 599
Query 595 GCATTTGTATCGAAACTTGCTACCCTGCATCCCAAATTGCCAGTTATCCAAGCACTTGCA 654
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GCATTTGTATCGAAACTTGCTACCATGCATCCCAAATTGCCAGTTATCCAAGCACTTGCA 659
Query 655 GCGGAGGTTAGACAAACAACTCAGTCACTTCTCTCACAGCTTCTCCAGAAACTACGCTCA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCGGAGGTTAGACAAACAACTCAGTCACTTCTCTCACAGCTTCTCCAGAAACTACGCTCA 719
Query 715 AATATACAGTTACCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTT 774
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATATACAGTTGCCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTT 779
Query 775 GGCGAGTATGAAATGCGATTACAGTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGCGAGTATGAAATGCGATTACAGTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATT 839
Query 835 CTTGAGGATTTAGATCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCAC 894
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTGAGGATCTAGACCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCAC 899
Query 895 AGAATGCACCTATTTGACGTGGTTAACCAATATCGAGCTATATTTTCTGATGATACATCT 954
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 900 AGAATGCACCTATTTGACGTGGTTAACCAATATCGAGCTATATTCGCTGATGACACATCG 959
Query 955 GGGAGCGAAGAAAATTATGATGGTGGACTTTTGTTTAGCTGGGCCATGCATCAAATAACA 1014
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 GGGAGCGAAGAAAATTATGATGGTGGACTTCTGTTTAGCTGGGCCATGCATCAAATAACA 1019
Query 1015 TCACACCTGAAGACTCTAAAAATCATGCTTCCAAAGATTACTGAAGGAGGATCTCTATCA 1074
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCACACCTGAAGACTCTGAAAATCATGCTTCCAAAGATTACTGAAGGAGGATCTCTATCA 1079
Query 1075 AATATTTTGGATCAGTGCATGTACTGTGCGATGGGGCTTGGTGGGGTTGGGCTAGACTTC 1134
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 AATATTTTGGATCAGTGCATGTACTGTGCGATGGGGCTTGGTTGGGTTGGGCTAGACTTC 1139
Query 1135 CGGGGTCTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTAAACTTATTCTCCAAGAACATG 1194
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CGGGGTTTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTAAACTTATTCTCCAAGAACATG 1199
Query 1195 AGTACAGCAGTTGAGAATTTTCAGTTAGTTTTGGATTCACATCGATGGGTTCCATTACCA 1254
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGTACAGCGGTTGAGAATTTCCAGTTAGTTTTGGATTCACATCGATGGGTTCCATTACCA 1259
Query 1255 TCTGTTGGCTTTCCTTCAAGTGGTATTAATGAAGATAGCAAGGATGACGTCACACCTCCA 1314
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1260 TCTGTTGGCTTCCCTTCAAGTGGGATTAATGAAGATAGCAAGGATGATGTCACACCTCCA 1319
Query 1315 TCATACTTGATGGAGCACCCGCCACTTGCAGTTTTCATAAATGGGGTATCTTCTGCTTTG 1374
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 1320 TCATACTTGATGGAGCACCCGCCACTTGCAGTTTTCATAAACGGTGTATCTGCTGCTTTG 1379
Query 1375 AACGAATTACGTCCTTGTGCCCCGCTAAGTCTAAAGAATGTTGTTGCTCATGAACTGATC 1434
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 AACGAATTACGTCCTTGTGCCCCACTAAGTCTAAAGAATGTTGTTGCTCATGAACTGATC 1439
Query 1435 AAAGGACTCCAGGCCGTGTCTGACTCCTTACTAAGATACAATACAACTCGGATGCTTCGA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAAGGACTCCAGGCCGTGTCTGACTCCTTACTAAGATACAATACAACTCGGATGCTTCGA 1499
Query 1495 CTCAGTGAATCCAATCTATTCCTTTCACTTTGCCGAGCTTTTGTCGAGGTGGTTTTTCCA 1554
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTCAGTGAATCCAATCTCTTCCTCTCACTTTGCCGAGCTTTTGTCGAGGTGGTTTTTCCA 1559
Query 1555 CATTGCGCCACATGCTTTGGCCGATGTTATCCAGGTGGTGCCACAATCGTTATGGATGCC 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CATTGCGCCACATGCTTTGGCCGATGTTATCCAGGTGGTGCCACAATCGTTATGGATGCC 1619
Query 1615 AAGAGTGCATACGAAGGTCTGGGTCGCATCTTAGCTGCATCGTCCTCTCAAGAACCATCC 1674
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AAGAGCGCATACGAAGGTCTGGGTCGCATCTTAGCTGCATCGTCCTCTCAAGAACCATCC 1679
Query 1675 AACAAATCTCC-AAAGGTCATCAGCACGGACACAAAGGATGCATCAGAGAATGGTGTAGC 1733
||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 AACAAATCTCCGAAAG-TCATCAGCACCGACACAAAGGATGCATCAGAGAATGGTGTAGC 1738
Query 1734 CTCCCAACCTGAAGAAAAACAAGCCGAGAATCCAAACGCGAAAGAAGAAGATAACAGTCC 1793
||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||
Sbjct 1739 CTCCCAACCTGAAGAAAAACAAGCCGAGATTCCGAACGAGAAAGAAGA---TAACAGTCC 1795
Query 1794 CATTCCTTTGCAGACTCCTGAGATAACACCCGAGTCTTGAGA 1835
|||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1796 CATTCCCTTGCAGACTCCTGAGACAACACCTGAGTCTTGAGA 1837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5