BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G11990.1
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893121 jgi|Araly1|893121|Al_scaffold_0006_1117 821 0.0
> Ahg893121 jgi|Araly1|893121|Al_scaffold_0006_1117
Length=552
Score = 821 bits (444), Expect = 0.0
Identities = 518/553 (94%), Gaps = 8/553 (1%)
Strand=Plus/Plus
Query 1 ATGGGCCTCATCGTCATCATCATTGCATTGGTCATGGTCATGGTAGTTGCATCATCACCG 60
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGCCTCATCATCATCATCATTGCATTGGTCATGGTCATAGTAGTTGCATCATCACCG 60
Query 61 TCCGATCAAACAAATGTCCTCACTCCTCTTTGCATCAGCGAATGCTCCACGTGTCCCACC 120
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCGATCAAACAGATGTCCTCACTCCACTTTGCATCAGCGAATGCTCCACGTGTCCCACC 120
Query 121 ATTTGCTCTCCTCCGCC--CT-CTAAACCCTCTCCCTCCATGTCACCACCTCCGTCTCCC 177
||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||
Sbjct 121 ATTTGCTCTCCTCCGCCTTCTAATAAACCCTCTCCCTCCACGCCACCACCTCCGTCTCCC 180
Query 178 TCATTGCCGTTATCCTCTTCGCCACCGCCTCCTCCGCCACACAAACACTCTCCACCACCG 237
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCATTGCCGTTATCCTCTTCCCCACCGCCTCCACCGCCACACAAACACTCTCCACCACCG 240
Query 238 CTTTCACAATC-GCTTTCACCACCGCCGTTAATTACCGTCATCCATCCACCACCACCACG 296
||| |||| || | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CTTACACAGTCAG-GTTCACCACCGCCATTAATTACCGTCATCCATCCACCACCACCACG 299
Query 297 GTTTTACTATTTCGAGTCCACACCACCTCCTCCACCGCTATCTCCCGATGGAAAAGGTT- 355
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 GTTTTACTATTTTGAGTCCACACCACCTCCTCCACCACTATCTCCCGATGGAAAAGGTTC 359
Query 356 --CACCACCATCAGTACCATCGTCACCACCGTCGCCAAAGGGACAGTCACAAGGGCAGCA 413
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 360 ACCACCACCATCACTACCATCGCCACCACCATCGCCAAAGGGACAGTCACAAGGGCAGCA 419
Query 414 GCAACCTCCTTATCCATTTCCTTATTTCTATTTCTACACGGCATCAAATGCAActcttct 473
|| |||||||| |||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 420 ACAGCCTCCTTACCCATTTCCTTATTTCTATTTCTACACGGCATCAAATTCAATTCCTCT 479
Query 474 cttttcttcttcattcttgattgctcttgttgtatcttctctatctatttttcttAACGG 533
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTTTCTTCTTCTTTTTTGATTGCTCTTGTTGTATCTTCTCTATCTATTTTTCTTAACGG 539
Query 534 TTCGTTAGTGTAA 546
|||||||||||||
Sbjct 540 TTCGTTAGTGTAA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19917217458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5