BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G11990.1 Length=546 Score E Sequences producing significant alignments: (Bits) Value Ahg893121 jgi|Araly1|893121|Al_scaffold_0006_1117 821 0.0 > Ahg893121 jgi|Araly1|893121|Al_scaffold_0006_1117 Length=552 Score = 821 bits (444), Expect = 0.0 Identities = 518/553 (94%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 1 ATGGGCCTCATCGTCATCATCATTGCATTGGTCATGGTCATGGTAGTTGCATCATCACCG 60 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGGCCTCATCATCATCATCATTGCATTGGTCATGGTCATAGTAGTTGCATCATCACCG 60 Query 61 TCCGATCAAACAAATGTCCTCACTCCTCTTTGCATCAGCGAATGCTCCACGTGTCCCACC 120 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 TCCGATCAAACAGATGTCCTCACTCCACTTTGCATCAGCGAATGCTCCACGTGTCCCACC 120 Query 121 ATTTGCTCTCCTCCGCC--CT-CTAAACCCTCTCCCTCCATGTCACCACCTCCGTCTCCC 177 ||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||| Sbjct 121 ATTTGCTCTCCTCCGCCTTCTAATAAACCCTCTCCCTCCACGCCACCACCTCCGTCTCCC 180 Query 178 TCATTGCCGTTATCCTCTTCGCCACCGCCTCCTCCGCCACACAAACACTCTCCACCACCG 237 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 181 TCATTGCCGTTATCCTCTTCCCCACCGCCTCCACCGCCACACAAACACTCTCCACCACCG 240 Query 238 CTTTCACAATC-GCTTTCACCACCGCCGTTAATTACCGTCATCCATCCACCACCACCACG 296 ||| |||| || | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 CTTACACAGTCAG-GTTCACCACCGCCATTAATTACCGTCATCCATCCACCACCACCACG 299 Query 297 GTTTTACTATTTCGAGTCCACACCACCTCCTCCACCGCTATCTCCCGATGGAAAAGGTT- 355 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 300 GTTTTACTATTTTGAGTCCACACCACCTCCTCCACCACTATCTCCCGATGGAAAAGGTTC 359 Query 356 --CACCACCATCAGTACCATCGTCACCACCGTCGCCAAAGGGACAGTCACAAGGGCAGCA 413 ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 360 ACCACCACCATCACTACCATCGCCACCACCATCGCCAAAGGGACAGTCACAAGGGCAGCA 419 Query 414 GCAACCTCCTTATCCATTTCCTTATTTCTATTTCTACACGGCATCAAATGCAActcttct 473 || |||||||| |||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 420 ACAGCCTCCTTACCCATTTCCTTATTTCTATTTCTACACGGCATCAAATTCAATTCCTCT 479 Query 474 cttttcttcttcattcttgattgctcttgttgtatcttctctatctatttttcttAACGG 533 | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CCTTTCTTCTTCTTTTTTGATTGCTCTTGTTGTATCTTCTCTATCTATTTTTCTTAACGG 539 Query 534 TTCGTTAGTGTAA 546 ||||||||||||| Sbjct 540 TTCGTTAGTGTAA 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19917217458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5