BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12020.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488044 jgi|Araly1|488044|fgenesh2_kg.6__1178__AT5G12020.1 745 0.0
Ahg488045 jgi|Araly1|488045|fgenesh2_kg.6__1179__AT5G12030.1 614 3e-175
> Ahg488044 jgi|Araly1|488044|fgenesh2_kg.6__1178__AT5G12020.1
Length=610
Score = 745 bits (403), Expect = 0.0
Identities = 457/483 (95%), Gaps = 3/483 (1%)
Strand=Plus/Plus
Query 57 CTAACAATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTC 116
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 27 CTAACAATGGATTTGGGAAGGTTTCCAATAATCTCAATTCTCGAAGACATGCTCGAAGTC 86
Query 117 CCCGAAGACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGAC 176
|| ||||| | | |||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 87 CCTGAAGA-C-C-ACAATGAGAAGACCCGAAACAACCCTTCAAGAGTTTACATGCGAGAC 143
Query 177 GCTAAGGCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTC 236
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 144 GCAAAGGCAATGGCTGCTACACCAGCTGACGTCATCGAGCACCCGAACGCATACGCTTTC 203
Query 237 GTCGTGGACATGCCTGGAATCAAAGGAGATGAGATCAAGGTTCAGGTCGAGAACGACAAT 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GTTGTGGACATGCCTGGAATCAAAGGAGATGAGATCAAGGTTCAGGTCGAGAACGACAAT 263
Query 297 GTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTAT 356
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 264 GTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAGAACGAAGGCGTGAAGTAT 323
Query 357 GTGAGGATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 324 GTGAGGATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCT 383
Query 417 GATTTGGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAA 476
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 384 GATTTGGACAAGATCTCTGCTGTTTGTCATGATGGTGTTTTGAAGGTTACTGTTCAGAAA 443
Query 477 CTTCCTCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAgttgcttgagtttgt 536
||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 444 CTTCCTCCTCCTGAGCCAAAGAAGCCAAAGACTATTCAAGTTCAAGTTGCTTGAGTTTGT 503
Query 537 ttt 539
|||
Sbjct 504 TTT 506
> Ahg488045 jgi|Araly1|488045|fgenesh2_kg.6__1179__AT5G12030.1
Length=483
Score = 614 bits (332), Expect = 3e-175
Identities = 437/488 (90%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 63 ATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTCCCCGAA 122
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAA 60
Query 123 GACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGACGCTAAG 182
|| |||| | |||||||||||| |||||||||||| ||| ||||||||||||||| |||
Sbjct 61 GA--ACAA-ACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAG 117
Query 183 GCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTCGTCGTG 242
||||||||||||||||| |||||||| |||||||| ||| |||| |||| |||||||||
Sbjct 118 GCAATGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTG 177
Query 243 GACATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCT 301
||||||||||||||||||||||||||||| || ||||||| |||||| ||| || || ||
Sbjct 178 GACATGCCTGGAATCAAAGGAGATGAGATTCA-GGTTCAGATCGAGAGCGAGAACGTTCT 236
Query 302 TGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTATGTGAG 361
||||||||||||| | || |||||||||| |||||| |||||||||||||||| ||||||
Sbjct 237 TGTGGTGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAG 296
Query 362 GATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCAGATTT 421
||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 297 GATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTT 356
Query 422 GGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAACTTCC 481
|||||||||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 357 GGACAAGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCC 416
Query 482 TCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAgttgcttgagtttgttttgt 541
|||||| || || |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 417 TCCTCCTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTT-GT 475
Query 542 gattgtgt 549
||| ||||
Sbjct 476 GATCGTGT 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5