BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12030.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488045 jgi|Araly1|488045|fgenesh2_kg.6__1179__AT5G12030.1 719 0.0
Ahg488044 jgi|Araly1|488044|fgenesh2_kg.6__1178__AT5G12020.1 556 5e-158
> Ahg488045 jgi|Araly1|488045|fgenesh2_kg.6__1179__AT5G12030.1
Length=483
Score = 719 bits (389), Expect = 0.0
Identities = 451/482 (94%), Gaps = 0/482 (0%)
Strand=Plus/Plus
Query 61 TGGAGTTTGGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAAG 120
|||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 2 TGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAAG 61
Query 121 AACAAACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AACAAACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 121
Query 181 TGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGACA 240
||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||||||
Sbjct 122 TGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTGGACA 181
Query 241 TGCCTGGAATCAAAGGAGATGAGATTCAGGTCCAGATAGAGAACGAGAACGTGCTTGTGG 300
||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||
Sbjct 182 TGCCTGGAATCAAAGGAGATGAGATTCAGGTTCAGATCGAGAGCGAGAACGTTCTTGTGG 241
Query 301 TGAGTGGCAAAAGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGGATGG 360
||||||| ||||||||||| || | ||| ||||| |||||||||||||||||||||||||
Sbjct 242 TGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAGGATGG 301
Query 361 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTGGAGA 420
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 302 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTTGGACA 361
Query 421 AGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCTCCTC 480
|||||||||| ||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 362 AGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCCTCCTC 421
Query 481 CTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGATCGT 540
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 CTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTTGTGATCGT 481
Query 541 GT 542
||
Sbjct 482 GT 483
> Ahg488044 jgi|Araly1|488044|fgenesh2_kg.6__1178__AT5G12020.1
Length=610
Score = 556 bits (301), Expect = 5e-158
Identities = 443/511 (87%), Gaps = 12/511 (2%)
Strand=Plus/Plus
Query 61 TGGAGTTT-GGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAA 119
|||| ||| ||||||||||||||| | ||||| |||||||||||||| |||| |||||||
Sbjct 34 TGGA-TTTGGGAAGGTTTCCAATAATCTCAATTCTCGAAGACATGCTCGAAGTCCCTGAA 92
Query 120 GAACA-AACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGC 178
|| || || |||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 93 GACCACAA-TGAGAAGACCCGAAACAACCCTTCAAGAGTTTACATGCGAGACGCAAAGGC 151
Query 179 AATGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGA 238
|||||||||||||||||||||||| |||||||||||| | || |||| ||||| |||||
Sbjct 152 AATGGCTGCTACACCAGCTGACGTCATCGAGCACCCGAACGCATACGCTTTCGTTGTGGA 211
Query 239 CATGCCTGGAATCAAAGGAGATGAGATTCA-GGTCCAGATAGAGAACGAGAACGTGCTTG 297
||||||||||||||||||||||||||| || ||| ||| | |||||||| || |||||||
Sbjct 212 CATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCTTG 270
Query 298 TGGTGAGTGGCAAA-AGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGG 356
|||||||||| | | || ||||| || ||||| ||||| ||||| ||||||| |||||||
Sbjct 271 TGGTGAGTGG-AGAGAGGCAGAGAGAGAACAAAGAGAACGAAGGCGTGAAGTATGTGAGG 329
Query 357 ATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTG 416
|||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 330 ATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCTGATTTG 389
Query 417 GAGAAGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCT 476
|| ||||||||||| | |||| |||| ||||| ||||| || ||| ||| ||||||||||
Sbjct 390 GACAAGATCTCTGCTGTTTGTCATGATGGTGTTTTGAAGGTTACTGTTCAGAAACTTCCT 449
Query 477 CCTCCTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGA 536
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 450 CCTCCTGAGCCAAAGAAGCCAAAGACTATTCAAGTTCAAGTTGCTTGAGTTTGTTTTTT- 508
Query 537 TCGTGTTTTTGTGTTTTAATGAATGTAATCG 567
| | ||| || |||| | ||||||||||||
Sbjct 509 T--TATTTCTGGGTTTGA-TGAATGTAATCG 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5