BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12040.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488046 jgi|Araly1|488046|fgenesh2_kg.6__1180__AT5G12040.1 2102 0.0
> Ahg488046 jgi|Araly1|488046|fgenesh2_kg.6__1180__AT5G12040.1
Length=1465
Score = 2102 bits (1138), Expect = 0.0
Identities = 1384/1495 (93%), Gaps = 48/1495 (3%)
Strand=Plus/Plus
Query 1 AAACGCAAACGCAGAGGATTCATGAGTCATGGCTTTTGTG-AGGTGAAGTATCAATATCA 59
||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 1 AAACGCAGACGCAGAGGCTTCATGACTCATGGCTTTTGTGAAGGTGAAGTATCATTATCA 60
Query 60 TCTACCTACCTATATGATCATCGGACTAAAGTGAAATGAAGTCAGCAATTTCATCGTCAC 119
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTACCTA---A-CTGATCATCGGACTAAAGTGAAATGAAGTCAGCAATTTCATCGTCAC 116
Query 120 TCTTCTTCAATTCGAAGAATCTTTTAAACCCTAATCCTCTTTCTCGCTTCATTTCTCTCA 179
|||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 117 TCTTGTTCAATTCCAAGAATCTTTTAAACCCTAATCCTCTCTCTCGCTTCATCTCTCTCA 176
Query 180 AATCTAACTTCCTCCCTAAATTATCTCCGAGATCGATCACTAGTCACACCTTGAAGCTCC 239
|||||||||||||||||||| |||||||||||||||||| | | | || || |
Sbjct 177 AATCTAACTTCCTCCCTAAACTATCTCCGAGATCGATCA-T--T---A-----AATCT-C 224
Query 240 CATCTTCGTCAACCTCAGCTTTAAGATCCATTTCCTCTTCCATGGCTTCTTCTTTC-AAC 298
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 225 CATCTTCGTCAACCTCAGCTTTAAGATCCATCTCCTCCTCCATGGCTTCTTCTTTCAAAC 284
Query 299 CCTGAACAAGCTAGAGTTCCCTCTGCTCTTCCTCTCCCAGCTCCTCCGTTGACCAAATTC 358
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 285 CC-GAACAAGCTAGAGTTCCATCTGCTCTTCCCCTCCCAGCTCCTCCGTTGACTAAATTC 343
Query 359 AACATCGGATTGTGTCAGCTATCTGTTACATCTGACAAAAAGAGAAACATCTCTCATGCT 418
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 344 AACATCGGATTGTGTCAGCTATCTGTGACGTCTGACAAAAAGAGAAACATCTCTCACGCT 403
Query 419 AAAAAAGCCATTGAAGAAGCTGCTTCTAAAGGAGCTAAGCTTGTTCTCTTACCCGAAATT 478
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 404 AAAAAGGCCATTGAAGAAGCTGCTTCCAAAGGAGCTAAGCTTGTTCTCTTACCCGAGATT 463
Query 479 TGGAACAGTCCGTATTCCAATGATAGTTTTCCAGTTTATGCGGAGGAGATTGATGCAGGT 538
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 464 TGGAACAGTCCGTATTCCAATGATAGTTTTCCAGTTTATGCGGAAGACATTGATGCAGGT 523
Query 539 GGTGATGCTTCTCCTTCAACGGCAATGCTTTCTGAAGTTTCCAAACGTCTCAAGATTACA 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 524 GGTGATGCTTCTCCTTCAACGGCAATGCTTTCTGAAGTTTCTAAACGTCTCAAGATTACA 583
Query 599 ATCATTGGTGGATCTATACCAGAAAGAGTTGGAGATCGTTTGTATAACACTTGCTGTGTC 658
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 584 ATCATTGGTGGCTCTATACCAGAGAGAGTTGGGGATCGTTTGTATAACACTTGCTGTGTC 643
Query 659 TTTGGTTCCGATGGAGAGCTAAAAGCTAAGCATCGGAAGATACATTTATTTGATATAGAC 718
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 644 TTTGGTGCGGATGGAGAGCTCAAAGCTAAGCATCGGAAGATACATTTATTTGATATAGAC 703
Query 719 ATTCCCGGGAAGATTACTTTTATGGAATCCAAAACTCTTACTGCTGGAGAGACACCAACA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATTCCCGGGAAGATTACTTTTATGGAATCCAAAACTCTTACTGCTGGAGAGACACCAACA 763
Query 779 ATCGTTGACACAGATGTAGGGCGTATTGGAATAGGCATCTGTTATGATATCAGGTTCCAG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ATCGTTGACACAGATGTAGGGCGTATTGGAATAGGCATCTGTTATGATATCAGGTTCCAG 823
Query 839 GAGTTAGCTATGATATATGCTGCAAGAGGGGCTCATTTGCTGTGCTACCCGGGAGCCTTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GAGTTAGCTATGATATATGCTGCAAGAGGGGCTCATTTGCTGTGCTACCCGGGAGCCTTT 883
Query 899 AACATGACAACTGGACCATTGCATTGGGAATTACTACAAAGGGCCAGGGCTACGGATAAT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 884 AACATGACAACTGGACCATTGCATTGGGAATTACTACAAAGGGCCAGGGCTACAGATAAT 943
Query 959 CAGTTATATGTGGCGACATGCTCACCTGCCAGAGATTCAGGAGCTGGCTACACTGCTTGG 1018
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 944 CAGTTATATGTGGCGACATGCTCTCCTGCCAGAGATTCAGGAGCTGGCTACACTGCTTGG 1003
Query 1019 GGGCACTCAACACTCGTTGGGCCTTTTGGAGAAGTACTAGCAACGACTGAGCATGAGGAG 1078
|||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1004 GGGCACTCTACACTTGTCGGGCCTTTTGGAGAAGTACTAGCGACGACTGAGCATGAGGAG 1063
Query 1079 GCCATTATCATAGCAGAGATTGATTACTCTATCCTTGAACAACGAAGGACTAGCCTTCCA 1138
| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1064 GACATTATCATAGCAGAGATTGATTACTCAATCCTTGAACAACGAAGGACAAGTCTTCCA 1123
Query 1139 TTGAATAGGCAGCGGCGGGGAGATCTTTACCAGCTTGTAGACGTACAGCGCTTAGA-CTC 1197
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1124 TTGAATAAGCAGCGGCGGGGAGATCTTTACCAGCTTGTAGACGTACAGCGCTT-GAACTC 1182
Query 1198 TAAATGAACGCAGCAG---TAACTGTATATCTGAGAGAT-------A--TTGCG--AGTT 1243
|||||||||||| || |||||||| ||||||||||| | ||| | || |
Sbjct 1183 AAAATGAACGCAGGAGGAGTAACTGTACATCTGAGAGATTGTCTTTAGATTGTGTGAGCT 1242
Query 1244 GAGCACGATTTGGTTACTTACAACTTCATGCATGATCAGTCATTTCTCCACAACTTTGCT 1303
|||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||
Sbjct 1243 GAGCACGATTTGGTTACTTACAACTTCATG-AT---CAGTTATTTCCCCACAACTTTGCT 1298
Query 1304 GAGATATGTAAAAGAATAAAAATCAAACTTTTGAGTTAAAATCGAACAAAGGCAAGTAAA 1363
||||| || |||||||| | | |||| ||| |||||||||||||| ||||| ||
Sbjct 1299 AAGATAC--AA--GAATAAAACT-AT-CTTT-GAGATAAAATCGAACAAAA-CAAGTTAA 1350
Query 1364 TTCTGCTTA-GATAATGTGAACTCCACCCACTTGCCATGTGTTTGTTGTTTATAAACTTC 1422
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1351 TTCTGCTTAAGATAATGTGAACTACACCCACTTGCCATGTGTTGGTTGTTTATAAACTTG 1410
Query 1423 AATGCATTCTGATAACAATGTAGACTTGTGATTCGCAATCAGAATAGCATTTGAC 1477
||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||
Sbjct 1411 AATGCATTCTGATCATAATGTGGACTTGTGATTCGCAATCAAAATAGCATTTGAC 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5