BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12050.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488048 jgi|Araly1|488048|fgenesh2_kg.6__1182__AT5G12050.1 1866 0.0
> Ahg488048 jgi|Araly1|488048|fgenesh2_kg.6__1182__AT5G12050.1
Length=1355
Score = 1866 bits (1010), Expect = 0.0
Identities = 1262/1377 (92%), Gaps = 43/1377 (3%)
Strand=Plus/Plus
Query 33 aaaaCAGTTACGAGACATAAtctctctttttcctcctttg--tc-tcttcttctcattct 89
|||||||||| ||||||||||||||||||||| || |||| || |||||||||||||||
Sbjct 1 AAAACAGTTAAGAGACATAATCTCTCTTTTTCTTCTTTTGTCTCTTCTTCTTCTCATTCT 60
Query 90 tc--t--t--t-GTTATCGATCAAAACATGCATAAATCCAAAAGAAACCCGTCATTCTCC 142
|| | | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTAATCCTCTTTATCGATCAAATCATGCATAAATCCAAAAGAAACCCGTCATTCTCC 120
Query 143 TCCACTCTCCTCGATGAAATCTACAATTCCATCGATCCTAAAACCCAAAAAACACAACCT 202
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 TCCACTCTCCTCGATGAAATCTACAATTCCATCGATCCTAAAACCCACAAAACACAATCT 180
Query 203 TATGTCGGCTCTGTTAACACTACTACCAAAAAACAGAGCATTGTGACAAGATCGGTTCCT 262
| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 TTTGTCGGTTCTGTTAACACTACTACCAAAAAACAGAGCATTGTCACAAGATCGGTCCCT 240
Query 263 GACCGGAAAATCCACCGTGATCGTTTCTTTGGCTCTGTATCTTCTTCCTCTGATTCCAAC 322
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 GACCGGAAAATCCATCGTGATCGGTTCTTCGGCTCTGTATCTTCTTCCTCTGATTCCAAC 300
Query 323 TCTAGTATTTTCTCATCTTCAGACACCGAACTAACTCACGGTAAGAAGACAACTTCTTCT 382
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 301 TCTAGTATTTTCTCATCTTCCGACACCGAACTAACTCACATTAAGAAGACAACTTCTTCT 360
Query 383 AGGCCGTTATGTTTCGGTCCTTCTAAGACAAAACCAAGAAAAACAGAGGATAAAACTCTG 442
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 361 AGGCCGTTATGTTTCGGTCCTTCGAAGTCAAAACCAAGAAAAACAGAGGACAAAACTCTG 420
Query 443 TTCCACCAAAACAGAGCTACCCGAGTGTACGACGACTACGATTACGCCTCCGACGTCCCA 502
|| |||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 421 TTTCACCAAAACAGAGCAACCCGGGTGTACGACGACTACAATTACGCCTCGGACGTCCCA 480
Query 503 AAATTCAATAGACACGACGAGAATTGGGAGAATACGAGAAACAGAAGATCGGTGAAGAGC 562
||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 481 AAATTCACGAGACACGACGAGAACTGGGAGAATCCGAGAAACAGAAGATCAGTGAAGAGA 540
Query 563 TCCGGAAACCAAAAGAAACCAAAAACTCCAGCTTCACCTGGAGGAAGAATCGTTAACTTC 622
||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 541 TCCGGAAACCAAAAGAAGCCAAAAACTCCAGCTTCACCAGGAGGACGAATCGTTAACTTC 600
Query 623 TTAAATTCGTTGTTCAGCAACAATTCAAAACAATCCAATGCGGTTAAGAGTTATCCAAGG 682
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 ATAAATTCGTTGTTCAGCAACAATTCAAAACAATCCAATGCGGTTAAAAGTTATCCAAGG 660
Query 683 AAGACTAGTTACGATGATTCTGCTTACGTTAGGAAAACAAGTAATGATTATCATTCATCT 742
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 AAGACGAGTTACGACGATTCTGCTTTCGTTAGGAAAACAAGTAATGATTATCATTCATCT 720
Query 743 ACTACTACGTGTTCTTCAGCTTCTTCTTTCTCAAGGTCGTGTATGAACAAAGGCTACGAG 802
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 721 ACTACTACGTGTTCTTCAGCTTCTTCTTTCTCAAGATCTTGTATGAACAAAGGCTACGAT 780
Query 803 AAATCATCTGGGCGTATCAAAAGAAGCGTTAGATTTTCCCCGGTCAATGTTATCGTCCCC 862
|||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAATCATCTGATCGTATCAAACGAAGCGTTAGATTTTCTCCGGTCAATGTTATCGTCCCC 840
Query 863 GAGAGCTTCACCAGCAAAGAAGAAGATTATTTCAGTAACGGTAACGCTAGAAAGTCGGTG 922
|||||||| || |||||||||||||||||||||| ||| |||||||| ||||| ||||||
Sbjct 841 GAGAGCTTTACAAGCAAAGAAGAAGATTATTTCAATAATGGTAACGCAAGAAAATCGGTG 900
Query 923 AAGAAGAATGTGGAAGATGGAGGGAGGAGATCAGTGGAGGAGATAGCGAGAGAGTTCTTA 982
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 901 AAGAAGAATGTGGAAGATGGAGGGAGGAGATCAGTGGAGGAAATAGCGAGAGAGTTTTTA 960
Query 983 AGAGATTATCACAAGAATCATGAAAACAGTTTGGTTAAGACTAATGGTTTTGAGGATTat 1042
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 AGAGATTATCACAAGAATCATGAAAACAGTTTGGTTAAGAATAATGGTTTTGAGGATTAT 1020
Query 1043 gaagatgatgatgaagacgatgatgatgatgatg-T--TG------CAAGTGATTCGAGT 1093
||||||||||| ||||| |||||||||||||||| | || ||||||||||||||
Sbjct 1021 GAAGATGATGAAGAAGAAGATGATGATGATGATGATGATGATGTTGCAAGTGATTCGAGT 1080
Query 1094 TCAGATCTGTTTGAGCTTGATTTAGTTGGAAATCATCATCATCATAATGTGTACGGAGAT 1153
|| ||| |||||||||| |||||||||||||||||||||||| | | |||||||||||||
Sbjct 1081 TCGGATTTGTTTGAGCTGGATTTAGTTGGAAATCATCATCAT-A-A-TGTGTACGGAGAT 1137
Query 1154 GAACTTCCTGTGTATGAAACCACTTTTGCTGGTTTGATCTTGTGAAACtttttctctttt 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 GAACTTCCTGTGTATGAAACCACTTTTGCTGGTTTGATCTTGTGAAACTTTTTTTCTTTT 1197
Query 1214 ctcttttttgttcatgtttatttgttaatttagattttcgttgtataagttttaATCCAT 1273
||||| || | || ||| || | ||| | | ||| | || || |||||||
Sbjct 1198 CTCTTACTT-TAGAT-TTTCGTT-T-AAT--A-A-----GTT-T-TA--TT--AATCCAT 1239
Query 1274 GTGATTGTTGaaaaaaagaaaaa-aa-TCGCATGTGATTCTCCACTTTTGTGTTTGATTC 1331
|||||||||||||||| |||||| || ||||||||||||||| || |||||||||||||
Sbjct 1240 GTGATTGTTGAAAAAA-GAAAAAGAAATCGCATGTGATTCTCTACATTTGTGTTTGATTT 1298
Query 1332 AGTAACTATGTTGTGTTATAAATTTTGTGTTTGTAAAAATTTGATCCAATCATGTTT 1388
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1299 TGTAACTATGTTGTGTTATAAATTTTGTGTTTGTAAAAATATGATCCAATCATGTTT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5