BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12060.1
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325730 jgi|Araly1|325730|fgenesh1_pm.C_scaffold_6000950 614 2e-175
Ahg940693 jgi|Araly1|940693|scaffold_601237.1 573 4e-163
> Ahg325730 jgi|Araly1|325730|fgenesh1_pm.C_scaffold_6000950
Length=456
Score = 614 bits (332), Expect = 2e-175
Identities = 413/452 (91%), Gaps = 6/452 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAACATCCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCAAAATA 60
|||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1 ATGACAAACATCCTAAAAACACAAGTTCATGTGGTTGTAATATCTCTACTCATCCAAATA 60
Query 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACT-TCAAAA-A-TGGTG 117
||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||
Sbjct 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACTATAAAAACAATGGTG 120
Query 118 AGGATCACAAACCGCCTTGGTGATGGTTTGACCTTAAACCTTCATTGTAAGTCCGCAGAT 177
|||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||
Sbjct 121 AGGATCACAAACCGCCTTGGAGATGGTTCGACCTTAAACCTTCATTGCAAGTCCTCAGAT 180
Query 178 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGAACA 237
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATAGCTCTTGGTCGTTTAAGTTTAGACCA 240
Query 238 AGTATT---GTTGGAACGACACTTTTCTATTGTCATTTCACATGGCCTGGACAATCAAAA 294
| |||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 241 ACTATTATTGTTGGATCGACAATTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAA 300
Query 295 AGGTTTGACATTTACGATGATGACAGAGATGGTGTTCGTAGTCATATTTCATGCATCAAT 354
|||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 301 AGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTAGGGGTATTCCATGCATCTAT 360
Query 355 TGTATCTGGGATATAAGCATACAAGGGCCATGCATGTTTAGTGAAAGTGATCATGCATTT 414
||||| |||||||||| || | | ||||| |||| ||||| |||||||||||||||||||
Sbjct 361 TGTATATGGGATATAACCAAAGATGGGCCGTGCAGGTTTAATGAAAGTGATCATGCATTT 420
Query 415 AATATATGTTATGATTGGAATGGGAATCTAAG 446
|||||||||||||||||||||| |||| |||
Sbjct 421 GATATATGTTATGATTGGAATGGAAATCCAAG 452
> Ahg940693 jgi|Araly1|940693|scaffold_601237.1
Length=505
Score = 573 bits (310), Expect = 4e-163
Identities = 410/456 (90%), Gaps = 15/456 (3%)
Strand=Plus/Plus
Query 10 ATCCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCAAAATAGC-TT-TC- 66
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||
Sbjct 33 ATCCTAAAAACACAAGTTCATGTGGTGGTAATATCTCTACTCATCCAAATAGCTTTCTCA 92
Query 67 TCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACT-TCAAA--AATGGTGAGGATC 123
||||||| ||||| |||||||||| |||||||||||||| | ||| |||||||||||||
Sbjct 93 TCACAAGCGAAAAACGATTTTGATCTTAATTGGTCTACTATAAAATCAATGGTGAGGATC 152
Query 124 ACAAACCGCCTTGGTGATGGTTTGACCTTAAACCTTCATTGTAAGTCCGCAGATGACGAT 183
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 153 ACAAACCGCCTTGGTGATGGTTCGACCTTAAACCTTCATTGTAAGTCCTCAGATGACGAT 212
Query 184 CTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGAACAAGTATT 243
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 213 CTGGGCCTCCAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGACCAAATATT 272
Query 244 GTT---GGAACGACACTTTTCTATTGTCATTTCACATGGCCTGGACAATCAAAAAGGTTT 300
|| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 273 ATTTTTGGAGTGACACTTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTT 332
Query 301 GACATTTACGATGATGACAGAGATGGTGTTCGTA-GTCATATTTCATGCATCAATTGTAT 359
||||||||||||||||||||||||||||||||| | |||| |||||||| | |||||
Sbjct 333 AACATTTACGATGATGACAGAGATGGTGTTCGTAAGGG-TATTCCATGCATCTACTGTAT 391
Query 360 CTGGGATATAAGCATACAA-GGGCCATGCATGTTTAGTGAAAGTGATCATGCATTTAATA 418
|||||||||||||| | || |||||||||| |||||||||||| ||| ||||||||||||
Sbjct 392 CTGGGATATAAGCAAA-AATGGGCCATGCAGGTTTAGTGAAAGAGATGATGCATTTAATA 450
Query 419 TATGTTATGATTGGAATGGGAATCTAAGGA-CATAA 453
| |||||||| |||||||| |||| ||| | |||||
Sbjct 451 TTTGTTATGACTGGAATGGAAATCGAAG-ATCATAA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16368747681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5