BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12070.1
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940693 jgi|Araly1|940693|scaffold_601237.1 656 0.0
Ahg325730 jgi|Araly1|325730|fgenesh1_pm.C_scaffold_6000950 590 4e-168
> Ahg940693 jgi|Araly1|940693|scaffold_601237.1
Length=505
Score = 656 bits (355), Expect = 0.0
Identities = 419/450 (93%), Gaps = 3/450 (1%)
Strand=Plus/Plus
Query 13 CTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCCAAATAGC-TT-TC-TCA 69
||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||
Sbjct 36 CTAAAAACACAAGTTCATGTGGTGGTAATATCTCTACTCATCCAAATAGCTTTCTCATCA 95
Query 70 CAAGTGAAACCCGGTTCTGATCTAAAGTGGTCTACTTTAAAATCAGTGGTGACGATCACA 129
|||| |||| || || |||||| || ||||||||| |||||||| |||||| |||||||
Sbjct 96 CAAGCGAAAAACGATTTTGATCTTAATTGGTCTACTATAAAATCAATGGTGAGGATCACA 155
Query 130 AACCGCCTTGGCGATGGTTCGACCTTAAAACTTCATTGTAAGTCCGCAGATGACGATCTT 189
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 156 AACCGCCTTGGTGATGGTTCGACCTTAAACCTTCATTGTAAGTCCTCAGATGACGATCTG 215
Query 190 GGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAATTTAGACCAAGTATTGTT 249
|||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 216 GGCCTCCAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGACCAAATATTATT 275
Query 250 CCTGGAGTGACACTTTTCTTTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTTAAC 309
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTTGGAGTGACACTTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAATGGTTTAAC 335
Query 310 ATTTACGATGATGACAGAGATGGTGTTCGTATGGGTATTCCATGCATCTACTGTATCTGG 369
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 336 ATTTACGATGATGACAGAGATGGTGTTCGTAAGGGTATTCCATGCATCTACTGTATCTGG 395
Query 370 GATATAGGCAAATATGGGCCATGCAGGTTTAGTGAAATAGATGATGCATTTAATATTTGT 429
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 396 GATATAAGCAAAAATGGGCCATGCAGGTTTAGTGAAAGAGATGATGCATTTAATATTTGT 455
Query 430 TATGATTGGAATGGAAACCGAAGATCATAA 459
||||| ||||||||||| ||||||||||||
Sbjct 456 TATGACTGGAATGGAAATCGAAGATCATAA 485
> Ahg325730 jgi|Araly1|325730|fgenesh1_pm.C_scaffold_6000950
Length=456
Score = 590 bits (319), Expect = 4e-168
Identities = 412/457 (90%), Gaps = 6/457 (1%)
Strand=Plus/Plus
Query 1 ATGACAACCATGCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCCAAATA 60
||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGACAAACATCCTAAAAACACAAGTTCATGTGGTTGTAATATCTCTACTCATCCAAATA 60
Query 61 GCTTTCTCACAAGTGAAACCCGGTTCTGATCTAAAGTGGTCTACTTTAAAATCAGTGGTG 120
|||||||||||||||||| ||| || |||| | || ||||||||| ||||| || |||||
Sbjct 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACTATAAAAACAATGGTG 120
Query 121 ACGATCACAAACCGCCTTGGCGATGGTTCGACCTTAAAACTTCATTGTAAGTCCGCAGAT 180
| |||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||
Sbjct 121 AGGATCACAAACCGCCTTGGAGATGGTTCGACCTTAAACCTTCATTGCAAGTCCTCAGAT 180
Query 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAATTTAGACCA 240
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATAGCTCTTGGTCGTTTAAGTTTAGACCA 240
Query 241 AGTATTGTTCCTGGAGT-GACACTTTTCTTTTGTCATTTCACATGGCCTGGACAATCAAA 299
| |||| || |||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 241 ACTATTATTGTTGGA-TCGACAATTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAA 299
Query 300 ATGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTATGGGTATTCCATGCATCTA 359
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AAGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTAGGGGTATTCCATGCATCTA 359
Query 360 CTGTATCTGGGATATAGGCAAATATGGGCCATGCAGGTTTAGTGAAA-TAGATGATGCAT 418
||||| ||||||||| |||| ||||||| |||||||||| ||||| | ||| ||||||
Sbjct 360 TTGTATATGGGATATAACCAAAGATGGGCCGTGCAGGTTTAATGAAAGT-GATCATGCAT 418
Query 419 TTAATATTTGTTATGATTGGAATGGAAA-CCGAAGAT 454
|| |||| |||||||||||||||||||| || |||||
Sbjct 419 TTGATATATGTTATGATTGGAATGGAAATCC-AAGAT 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16597681215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5