BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12080.1
Length=2534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488052 jgi|Araly1|488052|fgenesh2_kg.6__1186__AT5G12080.1 3633 0.0
> Ahg488052 jgi|Araly1|488052|fgenesh2_kg.6__1186__AT5G12080.1
Length=2512
Score = 3633 bits (1967), Expect = 0.0
Identities = 2354/2537 (93%), Gaps = 41/2537 (2%)
Strand=Plus/Plus
Query 1 TGGTTTCTGGGTTTAAGCCAtttttttCCCACCGCCTCTGCAGCTCTGCTTTTTTAGCTG 60
||| ||| ||||||||||||||||| |||||||||||||| | || | || |||
Sbjct 1 TGGCTTCAGGGTTTAAGCCATTTTTCTCCCACCGCCTCTGTTTTTAAGC--TGCTA-CTG 57
Query 61 CTAtt-t--tttttttttGCTTT-TGGtcttcttcttcttcttcAAGAATGAGCTAATAC 116
|||| | ||| | | | ||| ||||||||||||||| |||||||||||||| ||||
Sbjct 58 GTATTATCATTTATCTAT-ATTTCAGGTCTTCTTCTTCTTATTCAAGAATGAGCTGATAC 116
Query 117 TCACAGAAGAAGAAGATTTTTCTTTGGATTTTTCACTACTGAGGCATTGTTGTGAAATTG 176
||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 117 TCACAGAAGAAGAAG--TTTTCTTTGGA-TTTTCACTACTGAGCCATTCTTGTGAAATTG 173
Query 177 GATGGTAGTAGCATTGGAATGGCAGAACAAAAGAGTAGTAACggaggaggaggaggagga 236
|| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 174 GACGCTAGTAGCATTGAAATGGCAGAACAAAAGAGTAGTAAC---GGAGGAGGAGGA-GA 229
Query 237 gATGTTGTTATCAATGTTCCAGTTGAGGAAGCATCAAGGCGTTCCAAGGAAATGGCTTCA 296
| ||||||||||||||| | | |||||||||||||| |||||||| |||||||||||||
Sbjct 230 -A-GTTGTTATCAATGTTTCTGGTGAGGAAGCATCAAAGCGTTCCATGGAAATGGCTTCA 287
Query 297 CCAGAGTCTGAGAAAGGAGTTCCCTTTAGTAAAAGCCCTTCTCCTGAAATCTCTAAGCTT 356
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 288 CCAGAGTCTGAGAAAGGAGTGCCCATCAGTAAAAGCCCTTCTCCTGAAATCTCTAAGCTT 347
Query 357 GTTGGTAGTCCTAACAAGCCTCCTAGAGCTCCAAATCAGAACAATGTGGGTCTAACTCAG 416
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 348 GTTGGTAGTCCTAACAAGCCTCCCAGAGCTCCAAATCAGAACAGTGGGGGTCTAACTCAG 407
Query 417 AGGAAATCTTTTGCAAGGTCGGTTTACTCAAAACCCAAGTCCCGGTTTGTTGATCCATCT 476
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 408 AGGAAATCTTTTGCGAGGTCGGTTTACTCAAAACCCAAGTCCCGGTTTGTGGATCCATCT 467
Query 477 TGTCCTGTAGACACAAGTATTCTAGAGGAGGAAGTTAGGGAGCAACTTGGTGCTGGTTTT 536
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 468 TGTCCTGTAGACACAACTGTTCTAGAGGAGGAAGTTAGGGAGCAACTTGGTGCCGGTTTT 527
Query 537 TCTTTTAGTAGAGCTTCTCCGAATAACAAATCTAATAGGAGTGTCGGGTCACCAGCACCG 596
|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 528 TCTTTTAGTAGATCTTCTCCGAATAACAAATCGAATAGGAGTGTCGGGTCAACAGCACC- 586
Query 597 GTT-ACTCCAAGTAAAGTCGTTGTTGAGAAAGATGAGGATGAGGAAATCTACAAGAAGGT 655
||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 587 GTTAACTCCAAGTAAAGCCGTTGTGGAGAAAGATGAAGATGAGGAAATCTACAAGAAGGT 646
Query 656 TAAGCTGAACAGAGAGATGCGCAGTAAGATAAGTACATTGGCTTTGATAGAGTCAGCTTT 715
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TAAGCTGAACAAAGAGATGCGCAGTAAGATAAGTACATTGGCTTTGATAGAGTCAGCTTT 706
Query 716 CTTTGTGGTGATTTTGAGCGCTTTGGTTGCGAGTTTAACCATTAATGTCCTGAAACATCA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 707 CTTTGTGGTGATTTTGAGCGCTTTGGTTGCGAGTTTAACCATTAATGTCCTGAAAAATCA 766
Query 776 CACCTTCTGGGGGCTAGAAGTCTGGAAATGGTGTGTGCTTGTGATGGTTATATTCAGTGG 835
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 767 CACCATCTGGGGACTAGAAGTCTGGAAATGGTGTGTGCTTGTCATGGTTATATTCAGTGG 826
Query 836 AATGTTGGTGACAAACTGGTTCATGCGTTTGATTGTGTTCCTCATAGAAACAAACTTTCT 895
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 827 AATGTTGGTGACCAATTGGTTCATGCGTTTGGTTGTGTTCCTCATAGAAACAAACTTTCT 886
Query 896 TTTGAGGAGAAAAGTGCTCTACTTTGTGCACGGCTTGAAGAAGAGCGTCCAAGTTTTCAT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 887 TTTGAGGAGAAAAGTGCTCTACTTTGTGCACGGCTTGAAGAAGAGCGTCCAAGTCTTCAT 946
Query 956 TTGGCTCTGCTTGATTCTTGTTGCTTGGATATTGTTGTTCAACCACGACGTGAAACGGTC 1015
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 947 ATGGCTCTGCTTGATTCTTGTTGCTTGGATATTGTTGTTCAACCGCGATGTGAAACGGTC 1006
Query 1016 CCCCGCAGCCACCAAAGTCCTCAAATGT-ATTACCAGGACTCTTATTTCCATTCTTACAG 1074
|| ||||| || ||| ||||||| || || |||||||||||||||||| ||||||| |
Sbjct 1007 CCAGGCAGCTACAAAAATCCTCAAC-GTCATAACCAGGACTCTTATTTCCGTTCTTAC-G 1064
Query 1075 GGG-CATTCTTTTGGCTGGTGAAAACACTCTTGTTGAAAATCCTTGCAGCGAATTTCAAC 1133
||| ||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1065 GGGTCATTCCTTTGGCTGGTGAAAACATTGTTGTTGAAAATCCTTGCAGCAAATTTCAAC 1124
Query 1134 GTCAATAACTTTTTCGATAGGATTCAAGATTCTGTTTTCCACCAGTATGTTCTACAAACG 1193
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTCAATAACTTTTTCGACAGGATTCAAGATTCTGTTTTCCACCAGTATGTTCTACAAACG 1184
Query 1194 CTCTCGGGTCTTCCACTTATGGAAGAGGCAGAGAGGGTCGGGCGTGAGCCAAGCACAGGC 1253
|||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1185 CTCTCGGGTCCTCCACTTATCGAAGAGGCAGAAAGGGTTGGGCGTGAGCCAAGCACCGGC 1244
Query 1254 CATTTGAGTTTCGCGACTGTAGTGAAAAAAGGAACGGTTAAAGAGAAGAAAGTGATTGAT 1313
||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1245 CATTTGAGTTTTGCTAGTGTAGTGAAAAAAGGAACGGTTAAAGAAAAGAAAGTGATTGAT 1304
Query 1314 ATGGGGAAAGTTCATAAGATGAAGCGGGAGAAAGTTTCGGCTTGGACTATGCGAGTTTTG 1373
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1305 ATGGGGAAAGTTCATAAGATGAAGCGAGAGAAAGTTTCTGCTTGGACAATGCGGGTTTTG 1364
Query 1374 ATGGAAGCGGTTAGAACTTCAGGTCTCTCTACTATCTCTGACACATTGGACGAAACAGCA 1433
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1365 GTAGAAGCTGTTAGAACTTCAGGTCTCTCTACAATCTCTGACACATTGGACGAAACAACA 1424
Query 1434 TACGGCGAGGGGAAAGAGCAAGCTGACAGAGAAATTACTAGTGAGATGGAGGCTTTGGCT 1493
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1425 TACGGTGAGGGGAAAGAGCAAGCTGATAGAGAAATTACTAGTGAGATGGAGGCTTTGGCT 1484
Query 1494 GCTGCTTACCATGTCTTCAGAAATGTTGCTCAGCCCTTCTTCAATTACATAGAGGAAGAG 1553
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1485 GCTGCTTACCATGTATTCAGGAATGTTGCTCAGCCTTTCTTCAATTACATAGAGGAAGAG 1544
Query 1554 GACTTGCTTAGGTTTATGATTAAGGAAGAGGTTGATCTTGTGTTCCCATTGTTTGATGGT 1613
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GACTTACTTAGGTTCATGATTAAGGAAGAGGTTGATCTTGTGTTCCCATTGTTTGATGGT 1604
Query 1614 GCCGCTGAGACCGGGAGAATTACAAGAAAAGCTTTCACAGAATGGGTGGTTAAGGTGTAC 1673
|| || |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1605 GCTGCCGAGACCGGGAAAATCACAAGAAAAGCTTTCACAGAATGGGTGGTTAAAGTGTAC 1664
Query 1674 ACGAGCCGGAGAGCTTTAGCGCATTCCTTAAACGACACAAAAACAGCGGTTAAGCAGTTA 1733
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1665 ACGAGCCGGAGAGCTTTAGCGCATTCGTTAAATGACACAAAAACAGCGGTTAAGCAGTTA 1724
Query 1734 AACAAACTTGTGACAGCAATCTTGATGGTGGTTACCGTTGTCATTTGGCTGCTCCTTCTA 1793
|||||||||||||||||||||||| | ||| ||||||||||||||||||| || ||||||
Sbjct 1725 AACAAACTTGTGACAGCAATCTTGGTTGTGATTACCGTTGTCATTTGGCTACTGCTTCTA 1784
Query 1794 GAAGTAGCAACGACTAAGGTTTTGCTGTTCTTCTCCACCCAACTCGTGGCTCTGGCTTTT 1853
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1785 GAATTAGCAACGACTAAGGTTTTGTTGTTCTTCTCCACCCAACTCGTGGCTCTGGCTTTT 1844
Query 1854 ATAATCGGAAGCACATGCAAAAACCTCTTTGAATCCATTGTGTTCGTATTCGTCATGCAT 1913
||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct 1845 ATAATCGGAAGCACATGCAAAAATCTCTTTGAATCAATTGTGTTTGTCTTCGTTATGCAT 1904
Query 1914 CCTTATGATGTCGGTGATCGATGTGTTGTTGACGGTGTCGCGATGCTGGTGGAAGAAATG 1973
||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||||
Sbjct 1905 CCTTATGATGTAGGTGATCGATGTGTTGTCGACGGTGTAGAGATGCTGGTTGAAGAAATG 1964
Query 1974 AATCTCTTAACGACAGTGTTCTTGAAGCTTAACAACGAGAAAGTGTATTATCCGAACGCT 2033
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1965 AATCTGTTAACGACGGTGTTCTTGAAGCTAAACAACGAGAAAGTGTATTATCCGAACGCT 2024
Query 2034 GTTTTGGCCACGAAACCGATAAGCAATTACTTCAGAAGTCCGAATATGGGAGAAACAGTG 2093
|||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2025 GTTTTGGCTACGAAACCCATAAGCAATTACTTCAGAAGTCCGGATATGGGAGAAACAGTG 2084
Query 2094 GAATTCTCTATCTCTTTCTCGACACCAGTCTCTAAGATAGCACATCTCAAAGAAAGAATC 2153
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2085 GAATTCTCTATCTCATTCTCGACACCAGTCTCCAAGATCGCACATCTCAAAGAAAGAATC 2144
Query 2154 GCCGAGTACTTGGAGCAGAACCCGCAACATTGGGCACCGGTTCACTCGGTGGTGGTGAAG 2213
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2145 GCCGAGTACTTGGAGCAGAACCCGCAGCATTGGGCACCGGTTCACACGGTGGTGGTGAAG 2204
Query 2214 GAGATAGAGAACATGAACAAGCTGAAGATGGCCCTATACAGTGACCACACCATCACGTTT 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 GAGATAGAGAACATGAACAAGCTGAAGATGGCCCTATACAGTGACCACACCATCACGTTT 2264
Query 2274 CAGGAAAACAGAGAGAGGAATCTTAGAAGAACCGAACTT-TCTTTGGCCATTAAGAGAAT 2332
||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 2265 CAGGAAAACAGAGAGAGGAATCTCAGAAGAACCGAACTTGT-TTTGAACATTAAGAGAAT 2323
Query 2333 GTTGGAGGACCTTCACATCGACTACACTCTCCTTCCTCAAGACA-TTAATCTCACAAAGA 2391
||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 2324 CTTGGAGGACCTTCACATCGACTACACTCTCCTTCCTCAAGA-AGTTAATCTCACCAAGA 2382
Query 2392 AGAACTGATGAGAACCAATTTAAAACCGGTTTGGTGTTTTTTCTAAACCGTTG-TTATAA 2450
|||| | |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 2383 AGAA-T--TGAGAACCAATTTATAACCGGTTTGGTGTTTTTTCTAAACCGTTACTT-TAA 2438
Query 2451 GACATTATTATTACCAAACGTTGTG--A-T---ACTGTTTTGTTTAAGGCTTTTAGAGTA 2504
|| || |||||||||||| ||| | | | |||||||||||| ||||||||||||||
Sbjct 2439 GA--TT-TTATTACCAAACTTTGCGGTACTGGTACTGTTTTGTTTTAGGCTTTTAGAGTA 2495
Query 2505 GATGATGAAATCAATTT 2521
|| ||||||||||||||
Sbjct 2496 GAAGATGAAATCAATTT 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95530334460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5