BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12090.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992 992 0.0
Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1 344 8e-94
Ahg483349 jgi|Araly1|483349|fgenesh2_kg.4__2409__AT2G42550.1 171 1e-41
Ahg935101 jgi|Araly1|935101|scaffold_403089.1 106 4e-22
Ahg346029 jgi|Araly1|346029|fgenesh1_pg.C_scaffold_4002371 91.6 1e-17
> Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992
Length=3609
Score = 992 bits (537), Expect = 0.0
Identities = 723/811 (89%), Gaps = 19/811 (2%)
Strand=Plus/Plus
Query 90 CAAATTCTTGGGAAAAGGTGTTTATGGTTCTGTTGATCTCATCAGATACACTAAAACCGA 149
||||||||| |||||||||| ||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 51 CAAATTCTTAGGAAAAGGTGCTTACGGTTCGGTTGATCTCATCAAATACACTAAAACTGA 110
Query 150 TGGTTCCTCGTTACAAGCCGCCGTAAAAACATCTTACGCTGAAGAT-CTCGAAGAATACG 208
||| |||||||| | ||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 111 TGGATCCTCGTTTCTGGCCGCCGTAAAAACATCTTACGCTG-AGATACTCGAAGATTACA 169
Query 209 ACGCGCTCAAAAGAGAGATACAGATTCTGTCTGAACTCAAGGGATATCCCAACATCGTTA 268
|||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||
Sbjct 170 ACGCTCTCAAAAGAGAGATTCAGATTTTGTCTGAACTCAAAGGATATCCGAACATCGTTA 229
Query 269 TTTGCTATGGAGACGATTTGGAAGAAGATTTCAACGAACACGGACA-CAAAGTTTACAAA 327
| || |||| ||||||||||||||||| ||||||||| |||||||| | ||||||||||
Sbjct 230 TATGTTATGAAGACGATTTGGAAGAAGGTTTCAACGATCACGGACATC-AAGTTTACAAG 288
Query 328 TTGCTTCTTGAATACGCAAACGAAGGGAGTTTAAGTTCATTCATGGAGAATTATCCCGAC 387
|||||||| || |||||||||||||||||| || |||| |||||||| |||||| | |||
Sbjct 289 TTGCTTCTCGAGTACGCAAACGAAGGGAGTCTACGTTCTTTCATGGAAAATTATACGGAC 348
Query 388 AGAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGATTGGTC 447
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 349 AAAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGTATGATTCTCGAAGGATTGGTC 408
Query 448 TCAATGCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC 507
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TCAATTCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC 468
Query 508 TCTCGGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTGATTTTGGAAACTGTAGACAA 567
|||||||||||| || |||||| |||||| ||||||| |||||| |||||||||||| ||
Sbjct 469 TCTCGGAAAGATGCTTCTTCGTACGAGTTGAAGATTTCTGATTTCGGAAACTGTAGAGAA 528
Query 568 GTCGGAGAAGTTCCGGATCACTGGAAAAGTGATTACCCGTATGTGGGAACGCCTG---AG 624
|||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||| |
Sbjct 529 GTCGGAGAAGTTCCGGATCACTGGGAAATTGATTTCCCGTTTGTGGGAACGCCTATTTAC 588
Query 625 -T-C----T---T-TCT--TCGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCGTTA 672
| | | | ||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 589 ATGCCGCCTGAGTCTCTCATCGACGGTGCTGCCAAAAAAACCCTAGATTTGTGGTCGTTA 648
Query 673 GGGTGCTTAGTGTTGAAGATTTATACAGGTGAGCAGCCATGGGAAAGAGTTACTAGTGTC 732
||||||||||||||| |||| |||||||||||| ||||||||| | | ||| | ||||
Sbjct 649 GGGTGCTTAGTGTTGGAGATGTATACAGGTGAGAAGCCATGGGCAGGGGTTGGAATTGTC 708
Query 733 GATTTCGTGAATTTTCTTAGTGATGGTGAAGCTCCAAATATTCCTGAATATGTGCCTTGT 792
||| ||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||||
Sbjct 709 GATCTCGTGAATTTTCTCAGTGATGGTGAAGCTCCAGATATCCCTGAGTGTGTGCCTTGT 768
Query 793 GATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACATGAGAAGAGAGGTACCGCG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 769 GATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACATGAGAAGAGAGGAAACGCG 828
Query 853 TCTGAGTTGTTATTGCATCCGTTTTTGTGTC 883
||||||||| | |||||||||||||||||||
Sbjct 829 TCTGAGTTGATGTTGCATCCGTTTTTGTGTC 859
> Ahg489577 jgi|Araly1|489577|fgenesh2_kg.6__2711__AT5G27510.1
Length=906
Score = 344 bits (186), Expect = 8e-94
Identities = 537/697 (77%), Gaps = 61/697 (9%)
Strand=Plus/Plus
Query 222 AGAGATACAGATTCTGTCTGAACTCAAG-GGATATCCCA-ACATCGTTA-TTTGCTATGG 278
|||||| | |||||| || |||||| || |||| ||| | | ||| || | || |||
Sbjct 141 AGAGATTCGGATTCTTTCCGAACTC-AGAGGATGTCCGAGA-ATC-ATACAATACTTTGG 197
Query 279 -AGACGATTTGGAAGAAGATTTCAACGA-ACACGGACACAAAGTTTACAAATTGCTTCTT 336
| ||||||||||||| | ||| || | | | ||| ||| ||| ||||| |||||||||
Sbjct 198 TA-ACGATTTGGAAGAGGGTTTTGACTATA-AGGGAAACAGAGTCTACAAGTTGCTTCTT 255
Query 337 GAATACGCAAACGAAGGGAGTTTAAGTTC-A-TTCATGGAGAATTATC-CCGACAGAAAG 393
|| ||||||| |||||| |||||||| | | |||||| | ||||| | | || |||||
Sbjct 256 GAGTACGCAACCGAAGGTAGTTTAAG--CGATTTCATGAATAATTA-CACAGATAGAAAA 312
Query 394 TTACCAGATC-CGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGATTGGTCTCAAT 452
|||||||| | |||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 313 TTACCAGA-CTTGATGATAAGAGACTTCACGCGTATGATTCTCGAAGGTTTGGTATCAAT 371
Query 453 GCATAGTCACGGTTATGTTCATTGCGATCTCAAATCCGATAACCTTCTTATCTTC-TCTC 511
||||| ||||||||||||||||| |||||||| || ||||| || ||| ||||| |
Sbjct 372 TCATAGCCACGGTTATGTTCATTGTGATCTCAAGTCAGATAATCTCCTTGTCTTCAAGT- 430
Query 512 GGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTGATTTTGGAAACT-G-TAGACAAGT 569
| | ||| | | | | | ||| || ||||||| ||||||||||| || | ||| ||||
Sbjct 431 GTAGAGA-T-T-C-T--TACGAATTGAAGATTTCTGATTTTGGAATCTCGTTAG--AAGT 482
Query 570 CGGAGAAGTTCCGGATCACTGGAAAAGT-GATTACCCGTATGTGGGAACGCCTGAGT-C- 626
||||||| |||| ||||||||||||| | || ||||| | ||| ||||| ||| | | |
Sbjct 483 CGGAGAAATTCCTGATCACTGGAAAA-TCGAATACCCTTTTGTTGGAACCCCTAATTACA 541
Query 627 T----------T-TCTTC--GACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCGTTAG 673
| | ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 TGCCGCCGGAGTCTCTTCAAGACGGTGTTGCCAAGAAAACCCTAGATTTGTGGTCATTAG 601
Query 674 GGTGCTTAGTGTTGAAGATTTATACAGGTGAGCAGCCATGGGAAAGAGTT-ACTAGTGTC 732
|||| ||||||||| |||| ||| ||| || |||||||| | | ||| | | || |
Sbjct 602 GGTGTTTAGTGTTGGAGATGTATGTGGGTAAGAAGCCATGGCTAGG-GTTTAATCCTGAC 660
Query 733 GATTTCGTGAATTTTCT-TAGTGATGGTGAA-GCTCCAAATATTCCTGA-A-TATGTGCC 788
||||| ||| | | || | | ||||| || |||||| | ||||| || | | | ||||
Sbjct 661 GATTTTGTGTCTATCCTCTC-TAATGGT-AATGCTCCAGAGATTCCCGAGAGT-T-TGCC 716
Query 789 TTGTGATGCAAGAGAGTTTATTGAAACGTGTTTCGCAAGGGAACA-TGAGAAGAGAGGTA 847
||| |||||||| ||||||||| ||||||||||||||||| ||| | || |||||||||
Sbjct 717 TTGCGATGCAAGGGAGTTTATTCAAACGTGTTTCGCAAGG-AACCCTAAGGAGAGAGGTA 775
Query 848 CCGCGTCTGAGTTGTTAT-TGCATCCGTTTTTGTGTC 883
| || |||||| || | | | |||| ||||||| |||
Sbjct 776 CTGCCTCTGAGCTGCTGTCT-CATCGGTTTTTGCGTC 811
> Ahg483349 jgi|Araly1|483349|fgenesh2_kg.4__2409__AT2G42550.1
Length=1035
Score = 171 bits (92), Expect = 1e-41
Identities = 498/685 (73%), Gaps = 64/685 (9%)
Strand=Plus/Plus
Query 199 GAAGAATACGACGCGCTCAAAAGAGAGATACAGATTCTGTCTGAACTCAAGGGATATCCC 258
||||| |||||| | ||| ||||||| || |||||||| || ||||||| |||| | |
Sbjct 130 GAAGACTACGACTCTCTCCAAAGAGAAATTCAGATTCTATCCAAACTCAAAGGATGT-CA 188
Query 259 AA-CATCGT-TATTTGCTAT-GG-A-GACGA-TTTGGAAGAAGATTTCAACGAACA-CGG 311
|| ||||| | |||||| || | | | ||| ||||| |||||| | | || |||
Sbjct 189 AAGAATCGTGCA-ATGCTATGGGAATTA-TACTTTAGAAGAGGATTTCGATG-TCAGCGG 245
Query 312 ACACAAAGTTTACAA-ATTGCTTCTTGAATACGCAAAC-GAAGGGAGTTTAAGTTCATTC 369
| | ||| ||||| |||| || | || ||||| | | | ||||| ||||| | |||
Sbjct 246 ATTCCGAGTCTACAAGATTG-TTATGGAGTACGC-AGCGGCAGGGAATTTAACCACTTTC 303
Query 370 ATGGAGAATTATC-CCGACAGAAAGTTACCAGATCCGATGATCAGAGACTTCACGCGGAT 428
||||| | ||| | || ||||||||||| || ||||||||| ||||||||| || ||
Sbjct 304 ATGGACAGTTA-CAAAGATAGAAAGTTACCGGAAACGATGATCAAAGACTTCACTCGTAT 362
Query 429 GATTC-TCGAAGGATTGGTCTCAATGCATAGTCACGGTTATGTTCATTGCGATCTCAAAT 487
||||| || ||||||||||||| | ||||| | ||||||||||||||||||||| |||
Sbjct 363 GATTCTTC-AAGGATTGGTCTCTGTTCATAGCCTCGGTTATGTTCATTGCGATCTAAAAC 421
Query 488 CCGATAACCTTCTTATCTTCTCTCGGAAAGATTCTGCTTCGTGCGAGTTAAAGATTTTTG 547
||||||| || ||| | || || || | ||| | | || | ||| || ||||||| |
Sbjct 422 CCGATAATCTACTTGTATT-TC-CGTATAGA--CAG--TCTTACGAATTGAAGATTTCAG 475
Query 548 ATTTTGGAAAC-T-GTAGACAAGTCGGAGAAGT-TCCGGATCACTGGAAAAG-TGA-TTA 602
|||| || | | | ||| |||| |||||| | | ||||| |||| ||| ||| |||
Sbjct 476 ATTTCGG-TTCTTCG-AGAAAAGTAGGAGAA-TATTCGGATTGCTGG-GAAGTTGATTTA 531
Query 603 CCCGTATGTGGGAACG-C------C---T-G--AG--TCTTTCTTCGACGGTGTTGCCAA 647
|||| |||||||||| | | | | || || || | ||||||| || |
Sbjct 532 -CCGTTTGTGGGAACGCCTATTTACATGTCGCCAGAATCAGTCCACAACGGTGTGGCTGA 590
Query 648 GAAAACCCTAGATTTGTGGTCGTTAGGGTGCTTAGTGTTGAAGATTTATACAGGTGAGCA 707
||||||||||||||||||||||||||||||| |||| || |||| ||||| |||| | |
Sbjct 591 GAAAACCCTAGATTTGTGGTCGTTAGGGTGCATAGTACTGGAGATGTATACCGGTGTG-A 649
Query 708 G-CCATGGGAAAGAGTTACTAGT-GTCGAT-TTCGTGAATTTTCTTAGTGAT-GGTGAAG 763
| |||||| ||| || | | | ||| || | | | |||| | ||| ||| |||
Sbjct 650 GTCCATGGTCG-GAGGTAGAATTTGAGGATCTT-GCGCCTATTCT-ATTGAAAGGTAAAG 706
Query 764 CTCCAAATATTCCTGA-ATATGTGCCTTGTGATGCAAGAGA-GTTTATTGAAACGTGTTT 821
| || | ||||| || | ||| || ||||||||||| || |||| | |||||||||||
Sbjct 707 CGCCGGAGATTCCAGAGAG-TGTACCGTGTGATGCAAG-GAAGTTTCTAGAAACGTGTTT 764
Query 822 CGCAAGGGAACA-TGAGAAGAGAGG 845
|||||| ||| | || |||||||
Sbjct 765 TGCAAGG-AACCCTAAGGAGAGAGG 788
> Ahg935101 jgi|Araly1|935101|scaffold_403089.1
Length=1083
Score = 106 bits (57), Expect = 4e-22
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 400 GATCCGATGATCAGAGACTTCACGCGGATGATTCTCGAAGGA-TTGGTCTCAATGCATAG 458
||| ||||||| ||||||||||| || ||||| || |||||| || ||||| || |||||
Sbjct 344 GATTCGATGATAAGAGACTTCACTCGTATGATCCTTGAAGGACTT-GTCTCTATCCATAG 402
Query 459 TCACGGTTATGTTCATTGCGATCTCAAATCCG 490
|||||||||||||||||||||||||||| |||
Sbjct 403 TCACGGTTATGTTCATTGCGATCTCAAA-CCG 433
> Ahg346029 jgi|Araly1|346029|fgenesh1_pg.C_scaffold_4002371
Length=690
Score = 91.6 bits (49), Expect = 1e-17
Identities = 69/78 (88%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 414 AGACTTCACGCGGATGATTCTCGAAGGA-TTGGTCTCAATGCATAGTCACGGTTATGTTC 472
||||||||| || ||||| || |||||| || ||||| || |||||||||||||||||||
Sbjct 255 AGACTTCACTCGTATGATCCTTGAAGGACTT-GTCTCTATCCATAGTCACGGTTATGTTC 313
Query 473 ATTGCGATCTCAAATCCG 490
|||||||||||||| |||
Sbjct 314 ATTGCGATCTCAAA-CCG 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5