BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12100.1
Length=2718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992 3864 0.0
Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178 571 8e-162
> Ahg350399 jgi|Araly1|350399|fgenesh1_pg.C_scaffold_6000992
Length=3609
Score = 3864 bits (2092), Expect = 0.0
Identities = 2380/2518 (95%), Gaps = 24/2518 (1%)
Strand=Plus/Plus
Query 12 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CCGGCAGCTCAACGATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCA 1153
Query 72 CCGTCAAGTTCACTGACTCTGTCTCAG---CATGCTCATGTCGTCGTCTCTTCTCTGCCT 128
|||||||||||||||| ||| |||||| |||||||| | ||||||||||||| ||||
Sbjct 1154 CCGTCAAGTTCACTGAGTCTTTCTCAGCATCATGCTCA--T-GTCGTCTCTTCTCAGCCT 1210
Query 129 CCACCGACCCCGAACCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCA-C- 186
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1211 CCACCGACCCCGAATCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCG 1270
Query 187 ----CG--GA--G--ACGAAAAGCTACGGAATCTCCGAGTTCTTCTCCAGCAGAATCGAA 236
|| || | ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1271 GAGACGAAGAGCGACACGAAAAGCTAAGGAATCTCCGAGTTCTTCTTCAGCAGAATCGAA 1330
Query 237 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCTTTCGCAT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1331 TCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCGTTCACAT 1390
Query 297 CGCCGAAAGAGCTCTTCTCCGCCTTCTCGTTATCATCTCCGTCGTTGAAACACGATTTCT 356
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 1391 CGCCGAAAGAGCTCTTCTCTGCCTTCGCGCTATCATCTCCGTCGTTGAAACACGATTTCT 1450
Query 357 CCTACTTGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CCTACATGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATT 1510
Query 417 TGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGCTCAGATTCGTTAACGCTTTTGC 476
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1511 TGTTCTTCGCTTTGAGGAATGAAGGTATTTTTCCCAGCTCAGATTCGTTAACGCTTTTGC 1570
Query 477 TTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACTATAAACGTGTTTTTGAACATTC 536
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1571 TTGATCATCTTGTGAAGACAAAACAATTCAGAGTGACTATAAACGTATTTTTGAATATTC 1630
Query 537 TCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTGA 596
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1631 TGGAATCGGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTCA 1690
Query 597 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAACCGGATGAAGCACGATAGAATCT 656
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1691 AATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAATCGGATGAAGCACGATAGAATCT 1750
Query 657 ATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGATTGTGTAAAGGGA-AAAGGATG 715
||||| ||||||||| |||||||||||||||||||| || ||||||| || | | ||||
Sbjct 1751 CTCCCACTGTGTTTATATACAATGTCCTTATTGATGGGTTATGTAAAGTGAGACA-GATG 1809
Query 716 AATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGTTACCTTCTTTGATA 775
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1810 AAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGCTACCTTCTTTGATA 1869
Query 776 ACGTATAACACGTTGATTGATGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 835
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1870 ACGTACAACACGTTGATCGACGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAA 1929
Query 836 GTGAGAGAACGTATGAAAGCGGATCATATCGAACCGAGTCTTATTACGTTTAATACTTTG 895
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1930 GTGAGAGAACGTATGAAAGCGGATAATATCGAACCGAGTCTTATTACGTTTAATACTTTG 1989
Query 896 CTTAAGGGGCTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 955
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 CTTAAGGGACTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATG 2049
Query 956 AAGGATCTGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 1015
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 AAGGATCAGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCG 2109
Query 1016 AGTAACGAGAAAGCTGAGGCTGCGTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 1075
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2110 AGTAACGATAAAGCTGATGCTGCTTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTG 2169
Query 1076 AAAATGAATGCTTATACTTGTAGCATTTTGTTGAATGCGTTGTGCAAAGAAGGAAAGATC 1135
|||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 2170 AAAATGAATGCTTATACTTGTAGCATATTGCTGAATGCGTTGTGCAAAGAGGGAAAGATA 2229
Query 1136 GAGAAAGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACGAGGTT 1195
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2230 GAGAAGGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACAAGGTT 2289
Query 1196 ATTTATAACACTATGATTGATGGATACTGTCGAAAAGGTGATCTGGTTGGTGCTCGTATG 1255
||||||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||| |||
Sbjct 2290 ATTTATAACACAATGATTGATGGATACTCTCGGAAAGGTGATCTAGTTGGAGCTCGGATG 2349
Query 1256 AAAATTGAAGCAATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGTAT-AATTGTTT 1314
||||| || || ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2350 AAAATCGATGCCATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGT-TCAATTGTTT 2408
Query 1315 GATTAGGAGATTTTGTGAATTGGGGGAAATGGAGAATGCTGAGAAAGAGGTTAACAAAAT 1374
|||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 2409 GATTAGGACATTTTGTGAATTGGGGGATATGGATAATGCTCAGCAAGAGGTTAACAAAAT 2468
Query 1375 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469 GAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGG 2528
Query 1435 GAGAAAATATGAATTTGATAAGTGCTTCGACATTCTTAAAGAAATGGAAGATAACGGGAC 1494
|||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 2529 GAGAAAGTATGAATTTGATAAGTGCTTCGACCTTCTTAAAGAAATGGAAGACATCGGGAC 2588
Query 1495 AATGCCGAATGTAGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 1554
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2589 GATGCCGAATGTTGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACT 2648
Query 1555 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGATAGAGGGGTTTCACCGAAAGTAAG 1614
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2649 TCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGACAGAGGGGTTTCACCGAATGTAAG 2708
Query 1615 GATATATAACATGCTAATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 1674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2709 GATATATAACATGCTTATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCG 2768
Query 1675 GTTTTCTAAGGAGATGCTCAAAAAGGGAATAGAATTAAACCTGGTGACTTATAACACCCT 1734
||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2769 GTTCTCTGAGGAGATGTTCAAAAAGGGAATAGAATTAAATCTGGTGACTTATAACACCCT 2828
Query 1735 CATTGATGGGTTGTCCATGACCGGAAAATTATCAGAAGCTGAAGACTTACTTCTTGAAAT 1794
|||||||||||||||||||| ||| |||||| |||||||||||||| | ||||| |||||
Sbjct 2829 CATTGATGGGTTGTCCATGAACGGGAAATTAGCAGAAGCTGAAGACATGCTTCTCGAAAT 2888
Query 1795 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATATGG 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2889 CTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATACAG 2948
Query 1855 ATTCGCTGGAAACGTGCAAAGATGTATCGCGCTCTATGAAGAGATGAAGAGATCAGGAAT 1914
||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2949 ATTTGCTGGAAACGTGCAAAGATGTATCGCGCTGTATGAAGAGATGAAGGGATCAGGAAT 3008
Query 1915 AAAACCCACTCTGAAGACATATCATCTTTTGATCAGTTTGTGTACCAAGGAGGGGATAGA 1974
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 3009 AAAACCCACTCTGAAGATATATCATCTTTTGATCAGTTTGTGCACCAAGGAGGGGATAGA 3068
Query 1975 GCTCACAGAGAGATTATTTGGAGAGATGTCATTGAAACCAGACTTATTAGTTTACAATGG 2034
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3069 GCTCACAGAGAAAATATTTGGAGAGATGTCGTTGAAACCAGACTTATTAGTTTACAATGG 3128
Query 2035 GGTTCTCCATTGCTACGCCGTACATGGAGACATGGAAAAGGCTTTTAATTTGCAGAAGCA 2094
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 3129 GGTTCTCCATTGCTATGCCGTACATGGAGATATGGATAAGGCTTTTAATTTGCAGAAGCA 3188
Query 2095 GATGATTGAAAAGAGTATCGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 2154
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3189 GATGATTGAAAAGAGTATTGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACA 3248
Query 2155 ACTGAAGGTAGGAAAACTGTGCGAGGTTAGGAGTTTGATTGACGAGATGAATGCCCGGGA 2214
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 3249 ACTGAAGCTAGGAAAACTGTGTGAGGTTAGGAGTTTGATTGACGAGATGAAAGCCCGGGA 3308
Query 2215 AATGGAACCTGAAGCTGATACATATAACATAATAGTGAAAGGGCATTGCGAGGTGAAAGA 2274
||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||| ||
Sbjct 3309 AATGGAACCTGAAGCTGATACATATGACATAATAGTGAAGGGGCATTGTGAGATGAAGGA 3368
Query 2275 TTATATGAGTGCATATGTTTGGTACAGAGAGATGCAAGAGAAGGGTTTTCTGTTAGATGT 2334
||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 3369 TTATATGGGAGCATATGTTTGGTACAGAGAGATGCAAGAGAAAGGTTTGCTATTAGATGT 3428
Query 2335 TTGCATAGGCAACGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 2394
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3429 TTGCATAGGCGATGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGA 3488
Query 2395 GATTGTCATTTCTGAGATGAATGGTCGCATGCTAGGTGATGTAACAGTGGATGAAGATCT 2454
|| |||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 3489 GAATGTCATTTCTGAAATGAATGGTCGCAAGCTAGGTGATGTAATAGTGGATGAGGATCT 3548
Query 2455 ATCTGCAACAGAGA-A-GCTTTGAAAATCAATAATGTGTGCTTCAAGATAAATCCTTT 2510
|||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||
Sbjct 3549 ATCTGCAACAGAGAGAAGCTTTGAAAATCAAGAATGTGTGCTTCAAGATAAATACTTT 3606
> Ahg895182 jgi|Araly1|895182|Al_scaffold_0006_3178
Length=579
Score = 571 bits (309), Expect = 8e-162
Identities = 357/380 (94%), Gaps = 3/380 (1%)
Strand=Plus/Plus
Query 395 ATGATTTCTGAAGCTGCGGATTTGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGC 454
||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 202 ATGATTTCTGAAGCTGCAGATTTGTTCTTCGCTTTGAGGAGTGAAGGTATTTTTCCCAGC 261
Query 455 TCAGATTCGTTAACGCTTTTGCTTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACT 514
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 262 TCAGATTCGTTAACACTGTTGCTTGATCATCTTGTGAAGGCGAAACAATTCAGAGTGACT 321
Query 515 ATAAACGTGTTTTTGAACATTCTCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGG 574
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 322 ATAAACGTGTTCTTGAATATTCTGGATTCTGATTTTCGTCCGAGTAAGTTCATGTATGGG 381
Query 575 AAAGCAATTCAAGCTGCTGTGAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAC 634
||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 382 AAAGCAATTCAAGCTACCGTCAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAT 441
Query 635 CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGA 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGG 501
Query 695 TTGTGTAAAGGGA-AAAGGATGAATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG 753
|| ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 502 TTATGTAAAGTGAGAAAG-ATGAAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG 560
Query 754 AAGATTGTTACCTTCTTTGA 773
||||||||| | ||||||||
Sbjct 561 AAGATTGTTGC-TTCTTTGA 579
Score = 241 bits (130), Expect = 3e-62
Identities = 163/178 (92%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 26 ATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCACCGTCAAGTTCACT 85
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGACTCGCTTAAGACTCGTTTCGAAATCTTCTCGTTACGCCACCGTCAAGTTCACT 60
Query 86 GACTCTGTCTCAGCAT---GCTCATGTCGTCGTCTCTTCTCTGCCTCCACCGACCCCGAA 142
|| ||||||||||||| |||||||||||| ||| | ||| ||||||||||||||| ||
Sbjct 61 GAGTCTGTCTCAGCATCATGCTCATGTCGTC-TCT-T-CTCAGCCTCCACCGACCCCAAA 117
Query 143 CCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCGGAGACGAAAAGC 200
||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||
Sbjct 118 TCCGAATCTCAACCCGCACAAGCTCCGCCTACGAATGCCGTCACCGGAGACGAAGAGC 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102538939540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5