BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12120.1
Length=2154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488055 jgi|Araly1|488055|fgenesh2_kg.6__1189__AT5G12120.1 3243 0.0
> Ahg488055 jgi|Araly1|488055|fgenesh2_kg.6__1189__AT5G12120.1
Length=2113
Score = 3243 bits (1756), Expect = 0.0
Identities = 2025/2148 (94%), Gaps = 46/2148 (2%)
Strand=Plus/Plus
Query 13 AAGCTCTCTCACcttcttcttcttcttcttcttcttctCCGGATCTCGCTTCTCCGTCAA 72
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AAGCTCTCTCACCTTCTTCTTCTTCTTCTTCCTCTTCTCCGGATCTCGCTTCTCCGTCAA 60
Query 73 CGACTCCGATCAACCTACCAGGATAACTTTG-TGTTGAGAAGATGTCTAGTGCATCCAAG 131
|||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||
Sbjct 61 CGACTCCGATCAACCTACTAGGATAACTTTGTTG-TGAGAAGATGTCTAGCGCATCCAAG 119
Query 132 ATGAAATCGAGAGACAAGAAGGTCATGAATGATTCACAGAAGACACCTAGTAAAGCGTCT 191
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 120 ATCAAATCGAGAGACAAGAAGGTTATGAATGATTCACAGAAGACACCTAGTAAAGCATCG 179
Query 192 GGATCCATGGGTGGAAGTA---GTGTTGTGGTTGGTGGTTATAATCCACTTTTGGGGACA 248
||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 180 GGATCCATGGGTGCAAGTACTGGTGTTGTGGTTGGTGCTTACAATCCACTTTTGGGGACA 239
Query 249 TTTCAAACCATTGAGTCGCTTTCAGCAACTGGCTCATCATCTCTTCACAATAATGGCCGG 308
||||||||| |||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 240 TTTCAAACCGTTGAGTCGCTTTCAGCAACTGGTTCCTCGTCTCTTCATAATAATGGCCGG 299
Query 309 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 359
Query 369 GGTAGCTGGTCAGGTGAATCTGAAGATCACAAAGAGAAAGTACCTAGTACTAGTATTGCT 428
||||||||||| ||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 360 GGTAGCTGGTCTGGTGACTCAGAAGATCACAAAGAGAAAGTGCCTAGTAC------TGCT 413
Query 429 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGTCTGAAG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGGCTGAAG 473
Query 489 AATGAAAGAAAGCATCAGCGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 548
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AATGAAAGAAAGCACCAACGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 533
Query 549 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCTGATTATATCTATGGGG 608
||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 534 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCAGATTATAGCAATGGGG 593
Query 609 ATTCCTCATGAGCGGGCAACTTATGCTCTTATGTTGAATGAAGGGAAAATAGAGGAATCT 668
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 594 ATTGCTCATGAGCGGGCAACTTATGCTCTTATGCTAAATGAAGGGAAAATAGAGGAATCT 653
Query 669 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCGACC 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCTACC 713
Query 729 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTAGAGTTGGAAACA 788
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 714 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTGGAGTTGGAAACA 773
Query 789 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 833
Query 849 GAGAAAGCAGAAGAAGCATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 908
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GAGAAAGCAGAAGAAACATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 893
Query 909 CCAGAGGATATTAGTGATAGTACTTCTGTTAACAATAGCAAAGTCCCTTCTGTGCTCACA 968
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 894 GTAGAGGATATTAGTGATAATACTTCTGTTAACAGTAGCAAAGTCCCTTCTGTGCTCACA 953
Query 969 AGTCAGAATACAGTAGGCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGGGAA 1028
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 954 AGTCAGAATACAGTAGCCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGTGAA 1013
Query 1029 GAAGCCCTTGACAGAAAGAATCTCGGTTACCCCAGAGGATCCAGCTACATTAGTGGAGAA 1088
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1014 GAAGCCCTTGACAGAAAGAATCTTGGTTACCCCAGAGGATCCAGTTACATTAGTGGAGAA 1073
Query 1089 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1133
Query 1149 CTGCAGCAAAATGCCCCCCTTGAAGAGAATAAACGCATACCATATCAACAGACACCACTG 1208
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 CTGCAACAAAATGCCACCCTGGAAGAGAATAAACGCATACCATATCAACAGACACCGCTG 1193
Query 1209 TCTCGATCAACAGAAGAAACACATTATGTGACGGCTCTAGGCGATCAATTCAAGAGGCTT 1268
|| ||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||
Sbjct 1194 TCGCGATCAACAGAAGAAACACATTATGTGGCGGCTCAAGGTGATCAATACAAGAGGCTT 1253
Query 1269 CAGCAGCAAGATATGAGGGAACCAGTTATGGTGATGCAGCAGCAGCAGCAACAACAACAA 1328
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1254 CAGCAGCAAGATATTAGGGAACCAGTTATGGTGATGCAGCAGCAGCA--A-CAACAACAA 1310
Query 1329 CGTTCTCAATCCGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTTACC 1388
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1311 CGTTCTCAATCTGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTCACT 1370
Query 1389 GGAGCAGCAGCAGCAG--G-CAGCGGTTGGCACCCTGCAAATAGATCTGAGGCGGCCCAA 1445
|||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1371 GGAGCAGCAGCAGCAGCAGGCAGCGGTTGGTACCCTGCAAATAGATCTGAGGCGGCCCAA 1430
Query 1446 TCTAACGGATACTTGCCCTCAAGAAGTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1505
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1431 TCTAACGGATACTTGCCCTCAAGAACTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1490
Query 1506 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGTGAACAACAATGGTCACAGAATG 1565
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1491 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGGGAACAACAACGGTCACAGAATG 1550
Query 1566 GCAGGATCTTCTGCTCCGCCTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1625
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GCAGGAGCTTCTGCACCGCTTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1610
Query 1626 TTTGGATCACTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACACGGATGGGTCACTG 1685
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1611 TTTGGTTCGTTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACGCGGATGGGTCATTG 1670
Query 1686 GGGCATTTGGATTACAACAACATCGACTGGAGTCTAGATAAAGGCCTAGCTTGTGTGAGA 1745
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1671 GGGCATTTGGATTACAACAACATTGACTGGAGTCTAGATAAAGGCCTGGCTTGTCCGAGA 1730
Query 1746 CCTAGCCAGCAGTATGTGGCAGCATCATCCCCATATAGTGCAGCATCATCCCCGTATGAA 1805
|| ||||||||||| ||||||||||||||||||||| | ||| |||| |||||
Sbjct 1731 CCGAGCCAGCAGTACGTGGCAGCATCATCCCCATAT-GA--AGC-TCAT------ATGAA 1780
Query 1806 GCGCACATGAATGGAAGGACAAGAATGAT-GACGAATGGGAATGGGATGGGTGTGGCAAT 1864
|| | ||||||||||| || ||||||||||||||||||||| ||||| ||
Sbjct 1781 -------TG---G-AAGGACAAGAAC-ATTGACGAATGGGAATGGGATGGGCGTGGCGAT 1828
Query 1865 GGGAGTGCAGGAAGCTGCTTTAGTTGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1924
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1829 GGGAGTGCAGGAAGCTGCTTTAGTGGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1888
Query 1925 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1948
Query 1985 TGCTCTTCTTCTAGAATAAAGATAAATGAAAGgagagagagagag-G-TGATGGATGATA 2042
||||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1949 TGCTCTTCT---AGAATAAAGAAAAATGAAAGGAGAGAGAGAGAGAGATGATGGATGATA 2005
Query 2043 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAAAATGGATCTT 2102
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2006 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAGAATGGATCTT 2065
Query 2103 TCAAATTTCCTTATATTTTATATCCTCCCCACATATTTAACATGGAGC 2150
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2066 TCAAATTTCCTTATATTTTATATCCTCCC-ACATATTTAACATGGAGC 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81056041360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5