BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12130.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940699 jgi|Araly1|940699|scaffold_601243.1 1687 0.0
> Ahg940699 jgi|Araly1|940699|scaffold_601243.1
Length=1168
Score = 1687 bits (913), Expect = 0.0
Identities = 1106/1194 (93%), Gaps = 34/1194 (3%)
Strand=Plus/Plus
Query 1 GGATTTGACACAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCC 60
||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2 GGATTTGACGCAAAACGCAATGAGCTTAGCTTCAGTTATCCACCACGGAATTTTTGCTCC 61
Query 61 GGCCAAATCGGATCGAATCTTTCTTACCATTCCGGT-GTTCCCGCCGGATTTCAGAGCTC 119
||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||
Sbjct 62 GGCGAAATCGGATCGAATCTTTCTCACCATTCCGGTAGTT-CCGCCGGATTTCCGAGCTC 120
Query 120 GTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGCTGCCA 179
||||||||||| ||||| | | | | | | ||||| | ||||||||| |
Sbjct 121 GTGGATGGACTGAGTCT-C---GT-T-T-C-------T--CTCTC--GTTTCAGCTGCGA 162
Query 180 ATCGTCGTCTCTCTCATCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATG 239
|||||||||||||||||||||||||||| | || ||||||| || ||||||||||||
Sbjct 163 ATCGTCGTCTCTCTCATCTTCCTCCTATTTCTTGCTCCAGAGAAATCGATCAGGAAGAT- 221
Query 240 AAGAGAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCAC 299
|| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 222 --GATAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATG----CA----A- 270
Query 300 GCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAGAAGAAACTTACA 359
||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 271 GCTCTTCGTCATCAGTAGATAGTGGAGGCTTGAACGATTATCAACAAGAAGAAACATACA 330
Query 360 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTTGGCACTGCGGTGGCATTTGGAATTGGAA 419
||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||
Sbjct 331 AAACTTCCTTCAAGACTGTTGCCTTGTGTGTAGGTACTGCGGTGGCTTTTGGAATCGGAA 390
Query 420 TAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGCTACATATTGGAGC 479
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 391 TAGGTTTGAAGGAAGGTGTTGGCAAGGCATCAGAGTTTTTCGCAGGCTATATATTGGAGC 450
Query 480 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGC 510
Query 540 CACTCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTT 599
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 511 CACCCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTCTTCCGTT 570
Query 600 TCACGCTCATTTTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAACCTACTGC 659
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 571 TCACGCTCATATTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAATCTACTGC 630
Query 660 TTGCTGCTGTAC-TCTTATATTCGTCATTCAAGTTATTTGCAAGTGAAGAAGATGATACA 718
|||||||||| | |||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 631 TTGCTGCTGTGCTTCTT-TATTCATCTTTCAAGTTATTTGCAAGTGAAGAAGATGATACA 689
Query 719 GATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 778
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GATCTATCCGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGT 749
Query 779 TACGATGGAAATCGATTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 838
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TACGATGGAAACCGGTTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTA 809
Query 839 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCAATACCAGCT 898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 810 CTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCGATACCAGCT 869
Query 899 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTA 958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 870 GTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACCTCTAATCTCTTTGCAATCCTA 929
Query 959 GGACTAAGGTCTCTCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAG 1018
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 930 GGACTAAGGTCTCTCTATACACTTATTTCTGAAGGAATGGACGAGCTAGAATACTTGCAG 989
Query 1019 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGGC 1078
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 990 CCATCAATAGCAGTTGTTCTTGGCTTCATAGGATTCAAGATGATCCTTGATTTCTTTGGG 1049
Query 1079 TTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCACTTTCTCTCAGTACCGGAGTA 1138
|||||| |||| || |||||||||||||||||||| || ||||||||| | || ||||||
Sbjct 1050 TTCCACGTATCGACTGAGGCATCACTTGGTGTCGTGGCGCTTTCTCTCGGCACAGGAGTA 1109
Query 1139 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAGCTGA 1192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1110 CTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAACTAAGAACTGAGAACTGA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5