BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12140.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1 813 0.0
> Ahg488056 jgi|Araly1|488056|fgenesh2_kg.6__1190__AT5G12140.1
Length=545
Score = 813 bits (440), Expect = 0.0
Identities = 515/549 (94%), Gaps = 13/549 (2%)
Strand=Plus/Plus
Query 83 CGAAAATGGCGGATCAACAAGCAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 142
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAAAATGGCGGATCAACAAGGAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 60
Query 143 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 120
Query 203 ACGAGAACTTGACTCTGGAGTACAAGAGGCTCCTTGGTGCGAAAACACAGGTTGTGGCAG 262
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 ACGAGAACGTGAGTCTGGAGTACAAGAGGCTCCTTGGTGCAAAAACACAGGTTGTTGCAG 180
Query 263 GAACAATGCACCATCTAACTGTGGAGGTGGCTGATGGTGAGACCAATAAGGTCTATGAGG 322
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 181 GAACAATGCACCATCTCACTGTGGAGGTGGCTGATGGTGAGACCAAGAAGGTCTACGAGG 240
Query 323 CCAAGGTTTTGGAGAAAGCTTGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 382
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCAAGGTTTTGGAGAAAGCATGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 300
Query 383 ACGATGTTTAATCCGAT-GCCCTGAGCTT-TCT-CTG-CGGCTTGAGTGAGGTCCTTGTG 438
|||||||||||| ||| || ||||||| | | ||| || |||||||||||||||||||
Sbjct 301 GCGATGTTTAATCTGATAGC--TGAGCTTAT-TGCTGTCG-CTTGAGTGAGGTCCTTGTG 356
Query 439 TGCTCTCAGACCACGTGATAAGAGTTCTGGTTTAACCAAGTTAACTTCTTTAATAAGTGA 498
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 357 TGCTCTCAGACCACGTGATAAGAGTTCCGGTTTAACCAAGTTAACTTCTTAAATAAGTGA 416
Query 499 A----A-TCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTCTCGTTTG 553
| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 417 ATGTGAATCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTTTCCTTTG 476
Query 554 TGTATTGCTATTAGCAAACTCTCACTTTTTATCTATCTGCTTTGATTTTACAAAACTTCA 613
||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||| |||
Sbjct 477 TGTATTGCTATTATCAAACTCTCACTTTATATCTATCTGCCTTGATTTTACCAAACATCA 536
Query 614 TGATGAAGA 622
||| |||||
Sbjct 537 TGACGAAGA 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5