BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12170.2
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488059 jgi|Araly1|488059|fgenesh2_kg.6__1193__AT5G12170.2 2429 0.0
Ahg893867 jgi|Araly1|893867|Al_scaffold_0006_1863 747 0.0
Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038 113 3e-24
> Ahg488059 jgi|Araly1|488059|fgenesh2_kg.6__1193__AT5G12170.2
Length=1617
Score = 2429 bits (1315), Expect = 0.0
Identities = 1535/1635 (94%), Gaps = 39/1635 (2%)
Strand=Plus/Plus
Query 1 AAAGGCAAAGTCCAAGTCAGCAACTCACTTCCGTCTCTCTCCCCCTCAAAACCAGCAGAA 60
|||||||||||||||||||||||||||||||||||||||| | || | || || ||
Sbjct 1 AAAGGCAAAGTCCAAGTCAGCAACTCACTTCCGTCTCTCT-CTCC-C----CC-TCAAAA 53
Query 61 CCAGTCTCACTCGATCCT-TAATCCACCATGGCAACGACTTCTCGCCGGTTTACCACCGG 119
||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 54 CCAGTCTCATTCGAT-CTCTAATCCACCATGGCAACGACTTCTCGTCGGTTTACCACCGG 112
Query 120 TTTATTCGCCTCGATCACCTCGGTCAAATCCCATTCCGCAAACCGACCTCAATCCATCTC 179
|||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 113 TTTAACCGCCTCGATCACCTTGGTCGAATCCCATTCCGCAAACCGACCTCAGTCCATCTC 172
Query 180 CCTAATCCGTCGAAACCACATCGA---TCATCGTCTACCGTTGATCGTTCCAAGTTCCAG 236
||| |||||||||||||||| ||| || ||||||||||| |||| |||||||||||||
Sbjct 173 CCTCATCCGTCGAAACCACACCGATCCTCGTCGTCTACCGTCGATCCTTCCAAGTTCCAG 232
Query 237 GCGGTGGATTATCCAAGC---G------GCGAGATCCTGGGATGGATTTGACGACGGAGC 287
|||||||||||| |||| | ||||||||||||||||||| ||| |||||||
Sbjct 233 GCGGTGGATTATTGAAGCGGTGTCACCAGCGAGATCCTGGGATGGATCTGATTACGGAGC 292
Query 288 TGAGGCGGAGATTAAGAAGCCAGGCGCGTATGGTTACGCGATCGGCGATAACGAGATCGA 347
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 293 TGAGGCGGAGATTAAAAAGCCAGGCGCGTGTGGTTACGCGATCGGCGATAACGAGATGGA 352
Query 348 AGGGAGCAGTAGTAGTACTGTCCATGTGATCGACGGAGAGCATGTTAAGACGGCGGAGAT 407
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AGGGAGC------AGTACTGTCCATGTGATCGACGGAGAGCATGTTAAGACGGCGGAGAT 406
Query 408 AGTGATATGGGCGGCGGTTACGGCGGCGTTTGGCGTCGGAAACAGAGTGATGTATAAGCT 467
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGTGATTTGGGCGGCGGCTACGGCGGCGTTTGGCGTCGGAAACAGAGTGATGTATAAGCT 466
Query 468 CGCGTTAGTTCCACTCAAGGAGTATCCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTA 527
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CGCGCTAGTTCCACTCAAGGAGTATCCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTA 526
Query 528 TGTAGCTGTATATTATACTATCTTGTATTTTCGATATCGTGCTGGAACTGTCACAGATGC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 527 TGTAGCTGTATATTATACTATCTTGTATTTTCGATATCGTGCTGGAACTGTCACAGAGGC 586
Query 588 AATGCTCTCGGTGCCAAAATCTCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AATGCTCTCGGTGCCAAAATCTCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC 646
Query 648 AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCAACGACAGTTTTATCTCA 707
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 647 AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCTACTACAGTTTTATCTCA 706
Query 708 GACATTTCTTGTCTGGCAAATTTTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCGT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GACATTTCTTGTCTGGCAAATTTTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCGT 766
Query 768 AAACCAAATACTCGGATGTACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGG 827
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AAACCAAATACTCGGATGCACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGG 826
Query 828 ATCAGGTGCTGCTCATTCATTGAATGAAGCCGGAGTATTATGGATTCTTCTAATGGTTCT 887
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 827 ATCAGGTGCTGCTCATTCATTGAAGGAAGCCGGAGTATTATGGATTCTTCTAACGGTCCT 886
Query 888 CTCTTTCTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCC- 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CTCTTTCTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCCT 946
Query 947 AAAGACGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTT 1006
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AAA-ACGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTT 1005
Query 1007 TCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGT 1065
Query 1067 TTAACCAACTCGGTACCTACCTAAAAGATGGTGCGGTTTGTTTTCTCAACAATGGGACAA 1126
||||||||||||||||||||||||||||||| || ||||| ||||||||| | |||||||
Sbjct 1066 TTAACCAACTCGGTACCTACCTAAAAGATGGCGCAGTTTGCTTTCTCAACCACGGGACAA 1125
Query 1127 TAACAAAAGGATGTGATGGGGCTCCGTTTTTGCCTCTGTTGTTTGTGATAATGAACATTG 1186
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 1126 TAACAAAAGGATGTGATGGGGCACCGTTTTTGCCTCTATTGTTTGTGACAATGAACATTG 1185
Query 1187 GCTATAACATTGCTCTTTTAAGACTCCTCAAGATTTCATCCGCGGTGGTTTCATGTCTTG 1246
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1186 GCTATAACATTGCTCTTTTAAGACTCCTCAAGATTTCATCGGCCGTGGTTTCGTGTCTTG 1245
Query 1247 CATCAACAGTCTCAGTGCCAATTGCAGTGTTTCTGTTCACAATGCCATTACCGTACCTTG 1306
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CATCAACAGTTTCAGTGCCAATTGCAGTGTTTCTGTTCACAATGCCATTACCGTACCTTG 1305
Query 1307 GAGTTGCATCATCACTACCAAAAGGGTTCATGGGAGGAACAATCATACTTGTATTGGGAA 1366
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1306 GAGTTGCATCATCATTACCAAAAGGGTTCATGGGAGGAACAGTCATACTTGTATTGGGAA 1365
Query 1367 TGATTCTTTATAGTTGGACACCACACGGAGCTAACTCTTCTCATACTGATTCAGTCATTC 1426
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1366 TGATTCTTTACAGTTGGACACCACAAGGAGCTAACTCTTCTCATACTGATACAGTCATTC 1425
Query 1427 CTTCACCTCCTCCAACATAGAGAGGGCTTAACTAAGGGGTTTTGCTTTTATATAAA-GAT 1485
||||||||||||| || |||| ||||||||| |||||| |||||||||||| |||| |||
Sbjct 1426 CTTCACCTCCTCCCACCTAGACAGGGCTTAATTAAGGGTTTTTGCTTTTAT-TAAAAGAT 1484
Query 1486 TTGAGAGATTTATGCAAATTCGGTTTGT--GTTT-AA-ATAAACTTATATTTGATCATAT 1541
|||||||||||||||||||||||||||| || | || ||||| | ||||||||||||||
Sbjct 1485 TTGAGAGATTTATGCAAATTCGGTTTGTACGTATCAAGATAAAATAATATTTGATCATAT 1544
Query 1542 GATGTTAATGGAAAAGTTGACATTT-TGTGTGTGTTGCGTTCACATTAGTATTC-TAGTT 1599
|||||||||||||||||||||||| | ||||||||||||||| ||||| |||| |||||
Sbjct 1545 AATGTTAATGGAAAAGTTGACATTTCT-TGTGTGTTGCGTTCAGATTAG-ATTCCTAGTT 1602
Query 1600 CATTAGTCAACGGCT 1614
||||||||||| |||
Sbjct 1603 CATTAGTCAACAGCT 1617
> Ahg893867 jgi|Araly1|893867|Al_scaffold_0006_1863
Length=1314
Score = 747 bits (404), Expect = 0.0
Identities = 835/1038 (80%), Gaps = 50/1038 (5%)
Strand=Plus/Plus
Query 377 TCGACGGAGAGCATGTTAAGACGGCGGAGATAGTGATATG-GGCGGCGGTTACGGCGGCG 435
||| |||| | |||| | |||| ||||||||| ||| | |||||| |||||||||
Sbjct 254 TCGCCGGAAAACATGACAGGACGATGGAGATAGTTATA-GCAGCGGCGACCACGGCGGCG 312
Query 436 TTTGGCGTC-GGAAACAGAGTGA-TGTATAAGCTCGC-GTTAGTTCCACTCAAGGAGTAT 492
|| || ||| |||| | | || | ||||||| || || ||| |||| |||||| | ||
Sbjct 313 TTGGGGGTCGGGAATC-GCGT-ATTGTATAAACTGGCTCTTA-TTCCTCTCAAGCAATAC 369
Query 493 CCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTATGTAGCTGTATA-TTATACTATCTT 551
|| |||||||| ||||| ||||||||||||||||||||||||||||| || | | |||||
Sbjct 370 CCCTTCTTCCTCGCGCAGCTCTCCACCTTCGGGTATGTAGCTGTATACTT-TTCGATCTT 428
Query 552 GTATTTTC-GATATCGTGCTGGAACTGTCACAGATGCA-ATGCTCTCGGTGCCAAAATC- 608
||| |||| |||| || ||||||| ||| ||| | | | ||||| || || |||||| |
Sbjct 429 GTA-TTTCAGATACCGAGCTGGAATTGTTACAAAAG-AGATGCTATCAGTTCCAAAA-CT 485
Query 609 TCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC-AGCTGCTGGCATGGCAGCCG 667
||||||||||||||||||| |||||||| |||| ||| | ||||||||| ||||| ||||
Sbjct 486 TCCATTTTTAATTGTTGGCGTCTTAGAGTCTCTTGCT-CTAGCTGCTGGGATGGCGGCCG 544
Query 668 CAGCGAATCTTTCGGGGCCATCAACGACAGTTTTATCTCAGACATTTCTTGTCTGGCAAA 727
|| | |||||||| || ||||| || |||||||||||||||||||||||| |||||||||
Sbjct 545 CATCAAATCTTTCTGGACCATCTACTACAGTTTTATCTCAGACATTTCTTATCTGGCAAA 604
Query 728 TT-TTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCG-TAAACCAAATACTCGGATG 785
|| || ||||||||||| |||||||||||||||||||| | |||| |||||| | |||||
Sbjct 605 TTCTT-TTCTCCATTATATTTCTCGGGAGGAGATATAG-GATAAATCAAATATTAGGATG 662
Query 786 TACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGGATCAGGTGCTGCTCATTC 845
|||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 663 TACTCTTGTAGCAGTTGGTGTAATCGTCAGTGTGGCAAGTGGATCGGGTGCCGCTCATTC 722
Query 846 ATTGAATGA-AGCCGGAGTA-TTATGGATTCTTCTAAT-G-GTTCTCTCTTTCTTGCTTC 901
||| || || | | ||| || || |||| |||||| || | ||| ||| |||| ||||||
Sbjct 723 ATTTAAAGATA-CAGGAATACTT-TGGAGTCTTCTTATGGTGTTGTCT-TTTC-TGCTTC 778
Query 902 AAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCCAAAGA-CGATTAAAG 960
||||||||| ||||||| ||||||||||||||||| ||||||| |||| | || || |||
Sbjct 779 AAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG-CAAAAAGCGGTTGAAG 837
Query 961 GGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTTTCCAAGCCATCTGC 1020
||||||||||| ||||| ||| | ||||| ||||||||||||| |||||||| ||| |||
Sbjct 838 GGTGCTTCACTTGATCTGTTTGTTGTAAACTCATATGGTTCAGTTTTCCAAGTCATATGC 897
Query 1021 ATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGTTTAACCAACT-CGG 1079
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 898 ATTGCATTGCTTCTTCCTTTTCTTTCAAAACTTTGGGGCATACCGTTTAACCAACTACCG 957
Query 1080 TACCTACCTAAAAGATGGTGCGGT--TTGTTTTCTCAACAATGGGACAATAACAAAAGGA 1137
| || | | ||| || | ||| ||||||||| || | ||| | | || || ||||
Sbjct 958 -AGTTATATCAGAGACGG-G-GGTGCTTGTTTTCTGAATATTGGTTCTAGAATAACAGGA 1014
Query 1138 TGTGATGGGGCTCCGTTT-TTGCCTCTGTTGTTTGTGATAATGAACATTGGCT-ATAACA 1195
|| || |||||||| || || ||| | ||||||| || |||||||| |||| | ||||
Sbjct 1015 TGCGAAGGGGCTCCCCTTCTT-CCTGTAATGTTTGTCATGATGAACAT-GGCTTACAACA 1072
Query 1196 T-TGCTCTTTTAAGACTCCTCAAGATTTCATCCGCGGTGGTTTCATGTCTTGCATCAACA 1254
| | | ||| || | || ||||||| ||||| || || || || | ||| ||||| ||
Sbjct 1073 TCTCC-CTTCTACGCCTTATCAAGATCTCATCTGCAGTTGTGTCGTCTCTGGCATCCACC 1131
Query 1255 GTCTCAGTGCCAATTGCAGTGTTTCTGTT-CACAATGCCATTACCGTACCTTGGAGTTGC 1313
|| |||||||| || || |||| ||||| ||| | || ||||||||||||| || ||
Sbjct 1132 GTTTCAGTGCCCATAGCGGTGTA-CTGTTTCACGCTTCCCCTACCGTACCTTGGGGTCGC 1190
Query 1314 ATC-ATCACTACCAAAAGGGTTCATGGGAGGAACAATCATACTTGTATTGGGAATGATTC 1372
||| | |||| |||| ||||| | | ||| ||| |||| || ||| | || ||| |||
Sbjct 1191 ATCTA-CACTTCCAAGGGGGTTTGTTGCAGGCACAGTCATCCTAGTACTCGGCATGCTTC 1249
Query 1373 TTTATAG-TTGGACACCA 1389
| ||| | ||||||||||
Sbjct 1250 TATAT-GCTTGGACACCA 1266
> Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038
Length=276
Score = 113 bits (61), Expect = 3e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 754 AGGAGATATAGCGTAAACCAAATACTCGGATGTACTCTTGTAGCTCTCGGTGTAATCGTC 813
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 22 AGGAGATATAGCGTAAACCAAATACTCGGATGCACTCTTGTAGCTCTCGTTGTAATCGGC 81
Query 814 AGTGTGGCAA 823
||||||||||
Sbjct 82 AGTGTGGCAA 91
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5