BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G12190.1

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940706 jgi|Araly1|940706|scaffold_601250.1                        671    0.0  


> Ahg940706 jgi|Araly1|940706|scaffold_601250.1
Length=419

 Score =  671 bits (363),  Expect = 0.0
 Identities = 397/413 (96%), Gaps = 3/413 (1%)
 Strand=Plus/Plus

Query  82   aagaagaagaagagaagCTATGACAACAATCAGTCTTCGCAAGAGTAACACCAGACTCCC  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    AAGAAGAAGAAGAGAAGCTATGACAACAATCAGTCTTCGCAAGAGTAACACCAGACTCCC  62

Query  142  ACCGGAGGTGAATCGCGTGCTCTACGTTCGTAACCTTCCCTTTAACATAACGAGCGAAGA  201
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  63   ACCGGAAGTGAATCGCGTGCTCTACGTTCGTAACCTTCCCTTTAACATAACGAGCGAGGA  122

Query  202  GATGTACGATATCTTCGGCAAGTACGGCGCAATTCGCCAGATTCGAATCGGTTGCGACAA  261
            |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct  123  GATGTACGATATCTTCGGCAAGTACGGCGCGATCCGCCAGATTCGAATCGGTTGTGACAA  182

Query  262  GGCGACGAAAGGTACTGCCTTCGTCGTTTACGAGGATATCTACGATGCCAAGAACGCCGT  321
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  183  GGCGACGAAAGGTACAGCCTTCGTCGTTTACGAGGATATCTACGACGCCAAGAACGCCGT  242

Query  322  CGACCATCTCTCTGGCTTCAACGTCGCGAATCGGTACCTAATCGTGTTATACTACCAGCA  381
            ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct  243  CGACCATCTCTCTGGCTTCAATGTCGCGAATCGGTACCTAATCGTGTTGTATTACCAGCA  302

Query  382  CGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAGTGAAGATGAGATCACCAAGTTGCA  441
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  303  CGCGAAGATGAGCAAGAAGTTTGACCAGAAGAAGAGTGAAGATGAGATTACAAAGTTGCA  362

Query  442  GGAGAAGTATGGAGTCTCTACCAAAGATAAGTAAT--T-GTCCTTGAATTCGA  491
            |||||||||||||||||||||||||||||||||||  | ||||| ||||||||
Sbjct  363  GGAGAAGTATGGAGTCTCTACCAAAGATAAGTAATAATTGTCCTCGAATTCGA  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24741773133


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5