BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12210.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488063 jgi|Araly1|488063|fgenesh2_kg.6__1197__AT5G12210.1 1851 0.0
Ahg317988 jgi|Araly1|317988|fgenesh1_pm.C_scaffold_3001004 898 0.0
> Ahg488063 jgi|Araly1|488063|fgenesh2_kg.6__1197__AT5G12210.1
Length=1287
Score = 1851 bits (1002), Expect = 0.0
Identities = 1216/1314 (93%), Gaps = 36/1314 (3%)
Strand=Plus/Plus
Query 51 CTAAGGAAGAAGAAGGTTTTGATG--TTAGTGAAAGGTTAGATTTTTTATT-CCGATCTT 107
|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1 CTAAGGAAGAAGAAGGTTTTGATGTTTTAGTGAAAGGTTAGATTTTTTTTTCCCGATCTT 60
Query 108 GGTCAGTCTCCTCCAATCGTGATTTCTCTTCTGGATCCAAGCTGATGAGCTCTACGTCTT 167
|||| |||||| ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTTCAGGCTCCTCGTATCGTAATCTCTCTTCTGGATCCAAGGTGATGAGCTCTACGTCTT 120
Query 168 CCTCCCAGATGGTTCAGCTCGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAA 227
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCCCAGATGGGTCAGCTTGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAA 180
Query 228 AGAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCTTACT 240
Query 288 GGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTTCTGAAGAGGAAGTCA 347
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 241 GGGGACTCACCACTCTCGACTTACTCGACAAGCTGGGCTGTGTTTCTGAAGATGAAGTCG 300
Query 348 TTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAACACTGGACACG 407
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAATACTGGACACG 360
Query 408 ATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCA 467
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 361 ATCCACATATTCTATATACACTCAGTGCCGTACAAATCTTGGCCCTCTTTGACAAAATTA 420
Query 468 ACATTCTTGACATTGGGAAAGTGTCAAGTTATGTTGCTAAGTTGCAGAATGAAGATGGAT 527
|||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 421 ACATTCTTGACATTGGGAAAGTATCAGGTTATGTTGCTAAGTTGCAGAACGAAGATGGAT 480
Query 528 CCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCT 540
Query 588 GTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTG 647
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 541 GTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCAGTTGAGTACATTG 600
Query 648 TGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAG 660
Query 708 GACAAATTTTCTGCTGCGTTGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATA 767
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACAGATTTTCTGCTGTGTGGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATA 720
Query 768 AGGACTCACTTGGTTGGTGGTTATGTGAAAGACAATTAAAGGCTGGGGGCTTAAATGGAC 827
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 721 AGGACTTACTTGGTTGGTGGTTATGTGAAAGACAAGTAAAGGGTGGGGGCTTAAATGGAC 780
Query 828 GTCCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGA 887
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGA 840
Query 888 TAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTCTGGACTGTCAGG 947
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTTTGGACTGTCAGG 900
Query 948 ATTTGGACAACGGAGGCATCTCAGACCGACCCGAGGATGCTGTTGATATCTTCCACACCT 1007
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 901 ATTTGGAAAACGGAGGCATCTCAGACCGACCTGACGATGCTGTTGATATCTTCCACACCT 960
Query 1008 ACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCAG 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 ACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCGG 1020
Query 1068 CCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGACTGCAATGGG 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 CCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGATTGCAATGGG 1080
Query 1128 TATATGATCTTAATGGTCAAACAATATGGCCGCAAGGCTCTCTATATGATTTGTTCATTG 1187
||| | ||||||||||||||| | | | ||||| |||||||||||
Sbjct 1081 TAT--GCTCTTAATGGTCAAAC--T----C--------T----ATATGCTTTGTTCATTG 1120
Query 1188 AATAATTTACTT-GGCGGTTTTAGAAGTTATGTATGCTCAAGGAGGAGGAGATTGCAATT 1246
|| | ||||| | |||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 1121 AACAGTTTACCTAGGCGGTTTTAGAAGTTTTGTATGCTCAAGGAGGAG-ACATTATAAGA 1179
Query 1247 TGGGTATGGGAACAGTCTCAA-A-TCTC--AATGTTGTATAACTT-GCTACATTATTGAG 1301
| || || | ||||| | |||| |||||||||| |||| |||||||| |||||
Sbjct 1180 ACACTTTGCAAA-A--CTCAACAGTCTCGCAATGTTGTATTACTTTGCTACATTTTTGAG 1236
Query 1302 GTTTCTGATGTAATGGAAACGAAGTTGTGTTGCTGCTACATTATATAAATCACA 1355
|||||| |||||||||||| |||||||||| | |||||| |||||||||||||
Sbjct 1237 GTTTCTAATGTAATGGAAATGAAGTTGTGT--C-GCTACACTATATAAATCACA 1287
> Ahg317988 jgi|Araly1|317988|fgenesh1_pm.C_scaffold_3001004
Length=909
Score = 898 bits (486), Expect = 0.0
Identities = 659/743 (89%), Gaps = 9/743 (1%)
Strand=Plus/Plus
Query 381 GTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTAC 440
|||||||||||||||| |||||||| ||||| ||| | |||||||||||||||||||||
Sbjct 170 GTGGCTTTGCCGGTAATACTGGACATGATCCGCATGTTATATATACACTCAGTGCTGTAC 229
Query 441 AAATCTTGGCCCTATTTGACAAAATCAA-CATTCTTGACATTGGGAAAGTGTCAAGTTAT 499
||||||||||||| ||||||||| | || ||||||||| | |||||||||||||||
Sbjct 230 AAATCTTGGCCCTCTTTGACAAACT-AAGCATTCTTGATGTCCAAAAAGTGTCAAGTTAT 288
Query 500 GTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGAT 559
||||| ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 289 ATTGCTGGGTTACAGAATAAAGATGGATCCTTCTCAGGAGATATGTGGGGCGAAGTAGAT 348
Query 560 ACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATC 619
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 349 ACAAGGTTTTCGTACATAGCTATATGCTGTCTCTCAATATTAAAATGTCTTGATAAGATC 408
Query 620 AATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGG 679
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 409 AATGTGGAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTCGGG 468
Query 680 TGCACACCTGGAGCAGAGTCCCATGCAGGACAAATTTTCTGCTGCGTTGGTGCTCTTGCT 739
|||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct 469 TGCACACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGCGTGGGTGCTCTTGCT 528
Query 740 ATCACTGGGAGTCTCCATCATGTTGATAAGGACTCACTTGGTTGGTGGTTATGTGAAAGA 799
||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 529 ATCACCGGGAATCTCCATCATGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGA 588
Query 800 C-A-ATTA-AAGGCTGGGGGCTTAAATGGACGTCCTGAGAAACTCGCTGATGTTTGCTAT 856
| | | || || |||| || ||||||||||| |||||||||||| ||||||||||||||
Sbjct 589 CAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTAT 648
Query 857 TCTTGGTGGGTCCTATCGAGCCTAATCATGATAGATAGAGTTCACTGGATCGACAAAGCA 916
||||||||||| |||| ||| |||||||||| ||||||||||| |||||||| |||| |
Sbjct 649 TCTTGGTGGGTGTTATCCAGCTTAATCATGATCGATAGAGTTCATTGGATCGAGAAAGGA 708
Query 917 AAGCTTGTCAAGTTCATTC-TGGACTGTCAGGATTTGGACAACGGAGGCATCTCAGACCG 975
|||||||||||||||| || ||||||||||||| |||| |||||||| ||||||||
Sbjct 709 AAGCTTGTCAAGTTCA-TCTTGGACTGTCAGGACATGGATAACGGAGGTATCTCAGA-TA 766
Query 976 A-CCCGAGGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTTTCCCTCC 1034
| ||| | |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 767 ATCCCAAAGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTC 826
Query 1035 TTGAGTATCCTGGAGTCAAAGTAATTGATCCAGCCTATGCTTTGCCTGTTGATGTCGTCA 1094
| |||||||||||||||||| ||||||||| ||||| ||||||||||| ||||| |||
Sbjct 827 TCGAGTATCCTGGAGTCAAACCAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCA 886
Query 1095 ACCGGATTATATTCACCAAATGA 1117
|||||||| | ||||||||||||
Sbjct 887 ACCGGATTCTCTTCACCAAATGA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5