BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12230.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488066 jgi|Araly1|488066|fgenesh2_kg.6__1200__AT5G12230.1 1652 0.0
> Ahg488066 jgi|Araly1|488066|fgenesh2_kg.6__1200__AT5G12230.1
Length=1274
Score = 1652 bits (894), Expect = 0.0
Identities = 1028/1089 (94%), Gaps = 24/1089 (2%)
Strand=Plus/Plus
Query 248 AACGAGATCTGGGCTTGTCGAAAGAAACGTGATATATATGCAGTGAGCCAGTGATCATGC 307
|||||||||| ||||| ||| |||||||||| ||| || | | | ||||||||||||
Sbjct 200 AACGAGATCT-GGCTTCTCG-AAGAAACGTG--ATACAT--A-T--G-CAGTGATCATGC 249
Query 308 AAAAGAA-ATTCAGAGTGCGATAGAGAAGATGGAGCCTGAACGTTTAAAATTTGGAGGTC 366
|||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 250 -AAAGAATATTCAGAGTGCGATAGAGAAGATGGAACCTGAGCGTTTAAAATTTGGAGGTC 308
Query 367 CAAGAGAGTTGTGCGGTGCTGCGGATCTTATATCTCAATTCAAACTAGTGCAACACCATG 426
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CAAGAGAGTTGTGTGGTGCTGCGGATCTTATATCTCAATTCAAACTAGTGCAACACCATG 368
Query 427 AATTCTTTTGCAAGAAATCTCTTCCTGTTTCTTTATCAGATTCCCATTATCTTCATAATG 486
||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||
Sbjct 369 AATTCTTTTGCAAGAAATCCCTTCCCGTCTCTCTATCAGATTCCCATTATCTTCATAATG 428
Query 487 TGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTGAGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 429 TGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTCAGA 488
Query 547 GCATATCACAGAGCCGGGAGACTAATATTCGCATCCAGCCTTTTGATATAGATGAGCTTC 606
|||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 489 GCATATCACAGAGCCGGGAGACTACTGTTCGCATCCAACCTTTTGATATAGATGAGCTTA 548
Query 607 AGGAGTCTTTCCAACTAAATGATATGACTCCTGTTGAATTACCCCCAGCAGAGAAGGGAG 666
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 549 AGGAATCTTTCCAACTAAATGATATGACTCCTGTTGAACTACCTCCAGCAGAGAAGGGAG 608
Query 667 CTCCTACAATTCCGTCTAAGTCAAAAAGTGAGTCGAAAGATAGGGACAGGAAACATAAGA 726
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 609 CTCCTACAATTCCGTCTAAGTCAAAAAGTGAGTCGAAAGATAAGGACAGGAAGCATAAGA 668
Query 727 AACACAAGGACAGGGATaaagacaaagatagagagcataagaagcacaagcacaaacata 786
|||||| |||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 669 AACACAGGGACAGGGATAAGGACAAAGATAGAGAGCATAAGAAGCATAAACACAAGCATA 728
Query 787 aagatagaagcaaagataaagataaagacaagGACCGAGACAGAAAGAAGGACAAAAATG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAGATAGAAGCAAAGATAAAGATAAAGACAAGGACCGAGACAGAAAGAAGGACAAAAATG 788
Query 847 GCCACCATGATTCGGGTGATCATTCTAAGAAACATCATGATAAGAAAAGGAAACACGATG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GCCACCATGATTCGGGTGATCATTCTAAGAAACATCATGATAAGAAAAGGAAACACGATG 848
Query 907 GAGATGAAGATCTTAATGACGTTCAGAGGCACaaaaaaaaCAAGCATAAAAGCTCAAAGC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAGATGAAGATCTTAATGACGTTCAGAGGCACAAAAAAAACAAGCATAAAAGCTCAAAGC 908
Query 967 TTGATGAGGTGGGTGCAATAAGGGTTGCTGGCTAAAAAAGTTGTAGACATTCCAATTTTG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGATGAGGTGGGTGCAATAAGGGTTGCTGGCTAAAAAAGTTGTAGACATTCCAATTTTG 968
Query 1027 TATTCTGCACTCGAGTAGGTGTCATGGAGAC-TTTAGAAGCACTTTTCAACTCACTGTAG 1085
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 969 TATTCTGCACTCGAGTAAGTGTCATGGAGAGGTTTAGAAGCACTTTTCAACTCACTGTAG 1028
Query 1086 ACAGCTTATTAGGTTAAAAGCCCAAACTGGTGAATTCATTCCTTGAAGAAGAAAGGGGAA 1145
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1029 ACAGCTTATTAGGTTAAAAGCCCAAAATGGTGAATTCATTCCTTGAAGAAGAAAGGGGAA 1088
Query 1146 ATTTGTGA-AATG-AAGAAGAAGAATTTAGTATCATAATTGATTTGGTGTCAGATTTGTA 1203
|||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1089 ATTTGTGAGAATGGAAGAAGAAGAATT-AGTATCATAATTGATTTGGTGTCAGATTTGTA 1147
Query 1204 ACATTTTT--CTTGGGGTGTTCTATTCCATCTCTTTTCTGTCTATATACTCAATACAACA 1261
||||||| ||||||||||| | ||||||||||| |||||||||| | ||||||| ||
Sbjct 1148 ACATTTTGGGCTTGGGGTGTTTTCTTCCATCTCTTCTCTGTCTATAAAATCAATACTACT 1207
Query 1262 CA-AATCGTTACTATTCATGTATAATAATTTA--CTTACCAATTGATGTT-GTTGAAAAA 1317
|| ||| |||||| |||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 1208 CACAAT-GTTACTGTTCATGTATAATAATTTATTCTT-CCAATTGATGTTTGTTGAAAAA 1265
Query 1318 GTAACTGTC 1326
| |||||||
Sbjct 1266 GGAACTGTC 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5