BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12235.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940712 jgi|Araly1|940712|scaffold_601256.1 488 9e-138
> Ahg940712 jgi|Araly1|940712|scaffold_601256.1
Length=352
Score = 488 bits (264), Expect = 9e-138
Identities = 299/315 (95%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAATTACTACTCTAGAAGAAAATCTAGGAAACACATCACTACAGTTGCCTTGATC 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 21 ATGGGAAATTACTACTCTAGAAGAAATTCTAGGAAACACATCACTACTGTTGCCTTGATC 80
Query 61 ATCCTTCTTCTTCTTTTGTTTCTGTTTCTTTACGCTAAAGC-T--TCATCGTCTTCTCCT 117
||||||||||||||||||||| ||||||||||||||||||| | ||||| ||||||| |
Sbjct 81 ATCCTTCTTCTTCTTTTGTTTTTGTTTCTTTACGCTAAAGCTTCATCATCCTCTTCTCAT 140
Query 118 AATATACATCATCACTCAACTCATGGAAGCTTGAAGAAATCTGGAAATTTGGATCCAAAG 177
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 141 AATATACATCATCACTCAACTCATGGAAGCTTGAAGAAACCTGGAATTTTCGATCCAAAG 200
Query 178 CTTCATGATCTTGACTCCAATGCTGCGTCATCAAGAGGATCAAAATATACTAATTATGAA 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 CTTCATGATCTTGACTCCAATGCTGCG---TCAAGAGGATCAAAATATACTAATTATGAA 257
Query 238 GGTGGTGGTGAAGATGTTTTTGAAGATGGCAAGAGAAGGGTCTTCACAGGTCCTAATCCA 297
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 258 GGTGGTGGTGAAGATGTTTTTGAAGATGGCAAGAGAAGGATCTTCACAGGTCCTAATCCT 317
Query 298 TTGCACAATAGATAA 312
|||||||||||||||
Sbjct 318 TTGCACAATAGATAA 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5