BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12240.1
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940713 jgi|Araly1|940713|scaffold_601257.1 279 2e-74
> Ahg940713 jgi|Araly1|940713|scaffold_601257.1
Length=331
Score = 279 bits (151), Expect = 2e-74
Identities = 163/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 423 AAATTTTGGGAAAATCTGAAAGCGGCTGCTGAGAAGAAGGTTGGTGGGGTTGAAGCAGAG 482
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 159 AAATTTTGGGAAAAGCTGAAAGCGGCTGCTGAGAAGAAGGTTGGTGAGGTTGAAGCAGAG 218
Query 483 AGATTTTGCAAGGCTTTCGAGAAACTCCACAAGAAACTTGTGTATGAAGAATTGGATCCA 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AGGTTTTGCAAGGCTTTCGAGAAACTCCACAAGAAACTTGTGTATGAAGAATTGGATCCA 278
Query 543 GAAGCTGCAAAGCGATATTTACTAAACTCTTAAACTTCTGTCTTCTATA 591
||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 279 GAAGCTGCAAAGCGATATTTAGTAAACTCTTAAATTTGTGTCTTCTATA 327
Score = 121 bits (65), Expect = 1e-26
Identities = 80/87 (92%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 49 ATCGAA-GAAAAAGGGAAGCCATGGACGACCAAGAGTTTCGTAGTCTCCTCGACCTCTTC 107
||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATCCAAGGAAAAA-GGAAGCCATGGACGACCAAGAGTTTCGTAGTCTCCTCGATCTCTTC 59
Query 108 CCAGTCGTACGTTCTCGTGACCACCGT 134
|| |||||||| ||||| |||||||||
Sbjct 60 CCCGTCGTACGCTCTCGCGACCACCGT 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29316523173
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5