BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12260.1
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893151 jgi|Araly1|893151|Al_scaffold_0006_1147 2983 0.0
> Ahg893151 jgi|Araly1|893151|Al_scaffold_0006_1147
Length=1896
Score = 2983 bits (1615), Expect = 0.0
Identities = 1809/1899 (95%), Gaps = 27/1899 (1%)
Strand=Plus/Plus
Query 53 ATGGTTTCTCAATCGAGAAGAAGGAACCCAACACTGAGATCCATGGCGATGGTATTTGCA 112
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTCTCAATCGAGAAGTAGAAACCTAACACTGAGATCCATGGCGATGGTATTTGCC 60
Query 113 CAACCCAAGAAAAACCTACttcctctcattctcttcctcttctgtatctccgtcatcatt 172
||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 61 CAACCCAAGAAAAACTTACTTCCTCTCCTTCTCTTCCTCTTTTGTATCTCCTTCATCATT 120
Query 173 ctcctcgttctcgtctccGAGACCACTCACTCTAACGCCGGACGAGGAACTACTTTCCGG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCTCGTTCTCGTCTCCGAGACCACTCACTCTAACGCCGGACGAGGAACTACTTTCCGG 180
Query 233 CGAAATTACAATGATCCCGCTCCTTTCACTTTCCTCATCAAGGTCCTCACCTTTAACCGT 292
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CGAAATTACAATGATCCCCCTCCTTTCACTTTCCTCATCAAGGTTCTCACCTTTAACCGT 240
Query 293 CTCCATTCTCTCTCCCGCTGTCTCAGATCTCTCTCCGCCGCAGACTACGGCGTTTCCGGA 352
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCACTCTCTCTCCCGCTGTCTCAGATCTCTCTCCGCCGCAGACTACGGCGTTTCCGGC 300
Query 353 GACAGAGGACGCATTCACCTCCACGTCTACATTGATCATTTCAACCTCGCGAGGAACGAT 412
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 301 GACAGAGGACGCATTCACCTCCACGTCTACATCGATCATTTCAACCTCGCGCGGAACGAT 360
Query 413 ACACCTGTGGAAGATAACTTGCAA-ATCGCGAGGGAAATCCTAGGGTTTGTGGATAGATT 471
||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 361 ACACCTGTGGAAGATAACTTG-AACAGCGCGAGGGAAATCCTAGGGTTTGTTGATAGATT 419
Query 472 CGAGTGGAGATTTGGGGAAAAAGTAGTTCACTATCGGACTGATAACGCTGGATTACAGGC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGAGTGGAGATTTGGGGAAAAAGTAGTTCACTATCGGACTGATAACGCTGGATTACAGGC 479
Query 532 GCAGTGGCTGGAAGCTTGGTGGCCGATCTCAGATCACGAATTCGCCTTCGTCGTTGAAGA 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 GCAGTGGCTGGAAGCTTGGTGGCCGAGCTCAGATCACGAATTCGCCTTCGTCGTTGAAGA 539
Query 592 TGATCTTGAGGTTTCTCCTCTTTACTATGGAATTCTGGAACGCCTGATTC-TCAAATACT 650
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 540 TGATCTTGAGGTTTCTCCTCTTTACTATGGAATTCTGGAACGCATGATTCAT-AAATACT 598
Query 651 ACTATGATACTTCCAATTTCAATCCTTCCATCTATGGAGCTTCGCTTCAGAGACCAAGGT 710
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACTATGATACTTCTAATTTCAATCCTTCCATCTATGGAGCTTCGCTTCAGAGACCAAGGT 658
Query 711 TTGTTCCAGGTAAACATGGGAATAAACTACATGTAGATCCCAAAACGAATCTGATCTTAT 770
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 659 TTGTTCCAGGTAAACATGGGAATAAACTGCATGTAGATCCCAAAACGAATCTGCTCTTAT 718
Query 771 ATCAGTTAGTGGGAACTTGGGGACAGCTTCTCTTCCCAAAACCGTGGAAAGAGTTCAGAC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATCAGTTAGTGGGAACTTGGGGACAGCTTCTCTTCCCAAAACCGTGGAAAGAGTTCAGAC 778
Query 831 TATGGTATGATGAGCACAAGTCGAAAGGCAAGAAGCCTTTCCTTGATGGCATGGTGTCAA 890
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 779 TATGGTATGACGAGCACAAGTCGAATGGCAAGAAGCCTTTCCTTGATGGCATGGTGACAA 838
Query 891 ACGGATGGTACAAGAGGCTGGGAGAACGAATATGGACACCTTGGTTCATAAAGTTTGTTC 950
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGGATGGTACAAGAGGCTGGGAGAACGAATATGGACACCTTGGTTCATAAAGTTTGTTC 898
Query 951 ATTCTCGTGGTTATTTTAACATCTATACAAGTTTCCCGAATGAGGGGGCTCTTA-GTGTC 1009
|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 899 ATTCTCGTGGCTATTTTAACATCTATACCAGTTTCCCGAATGAGGGGGCT-TTAAGTGTT 957
Query 1010 TCTCACAGGGATGCTGGTGTTAACTATGGAAGAACCGCTGGGCCAGACTCACAGTTATTG 1069
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 958 TCCCACAGGGATGCTGGTGTTAACTATGGAAAAACCGCTGGGCCAGACTCACAGTTATTG 1017
Query 1070 AATAAAAGTTCTCTCAGTTCTGATTCTCTGAAGCTCCAACCCTTGAGCAACCTTAAGTGG 1129
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 AATAAAAGTGCTCTCAGTTCTGATTCTCTGAAACTCCAACCCTTGAGCAACCTTAAGTGG 1077
Query 1130 TACGATTTCTGTTTCAGTGAAGTTGTTCCCGGTAGAGTTGTGAGAAACCTGAATGAACTT 1189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 TACGATTTCTGTTTCAGTGAAGTTGTTCCTGGTAGAGTTGTGAGAAACCTGAATGAACTT 1137
Query 1190 GGCACCATTCTTCCTTCTGTGCAGAGAGAGAAAACCATAATTCTGGTCAGTCTATATGGT 1249
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 GGCACCATTCTTCCTTCCGTGCAGAGTGAGAAAACCATAATTCTGGTCAGTCTATATGGT 1197
Query 1250 GCAGACAAGATGTTCATCAGGAACTTACTCTGCCATTTCGAGAAGCTTAATATTCAAAAC 1309
||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1198 GCAGAGAAGATGTTCACCAGGAACTTACTCTGCCATTTCGAGAAGCTTAATACTCTAAAC 1257
Query 1310 CACATTTTCATAGGCCCTAGCTCTGAGTTGTTCCACGATCTTTCAAGAAGGGGACATCCT 1369
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1258 CACATTTTTATAGGCCCTAGCTCTGAGTTGTTCTATGATCTTTCAAGAAGGGGACATCCT 1317
Query 1370 GTAATTGATGCGGATATGTTTCTAAACAAGTTGATCAAAAGCAAAACTTCTTATCCAAAC 1429
|| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1318 GTGATTGATGCGGATATGCTTCTCGACAAGCTGATCAAAAGCAAAACTTCTTATCCAAAC 1377
Query 1430 TCAGTGAAGGAGGCTCTGGGCAATTCTTACGTTGTCAAGAAATGCTTAGAACTTGGATAC 1489
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 TCAGCGAAGGAGGCTCTGGGCAATGCTTACGTTGTCAAGAAATGCTTAGAACTTGGATAC 1437
Query 1490 AGCACCTGGGCATTTTCAAGTAATTCGCTTTTGGTTGATAAAGGTCGTCTCCTTGACAGA 1549
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1438 AGCACCTGGGCATTTTCAAGTAACTCGCTTTTGGTTGATAAAGGTCCTCTCCTTGACAGA 1497
Query 1550 GTCAGCTCAGATTACGACATCTATATCGGGGAGAGCTCTGGAATTTTGATTGTTCAATCT 1609
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1498 GTTAGCTCAGAGTACGACATCTATATCGGGGAAAGCTCTGGAATTTTGATTGTTCAATCT 1557
Query 1610 TCATCAGTCACTCAAAAGTTATGGAGCAATGAGTTTCTACACAGCAT----T-----GCA 1660
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1558 TCATCAGTCACTCAAAAGTTATGGAGCAATGAGTTTCTACACAGCATCACATCCACAGCA 1617
Query 1661 --T------CC--CCA-AAA-CAAAGTCTAGATTTTATTCATCTAGTGAAAGAGCTAGTG 1708
| || || ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1618 ACTAAGAATCCGTCCCTAAATCAAAGTCTAGATTATATTCATCTAGTGAAAGAGCTAGTG 1677
Query 1709 GAGCAAAAGGGCAAGAGGATTAAGACCGTAGAGACGATGAATATTGCAGAAAATACCAAT 1768
||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 1678 GAGCAAAAGGGCAAGAGGATTAAGACCATAGAGACAATGGATATTGCAGAAAATACCAAT 1737
Query 1769 GCCAACAGCGTAAACCAATCGTTGGGAGATGGCAAGCCGGTGGTGTATTGGTCTCCTGAG 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GCCAACAGCGTAAACCAATCGTTGGGAGATGGCAAGCCGGTGGTGTATTGGTCTCCTGAG 1797
Query 1829 GTTGCTCCCAATATGATTCGGTCAAAGCTAGAAGAGTTGAGCTTGTGGCTCATCGATGAT 1888
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1798 GTTGCTCCCAATATGATTCGGTCAAAGCTAGAAGAGTTGAACCTGTGGCTCATCGATGAC 1857
Query 1889 GATCTCTCTTGCAAGGCCGTGGTTTGTCATAGTTCATAA 1927
||||||||||||||||||||||||||||||| |||||||
Sbjct 1858 GATCTCTCTTGCAAGGCCGTGGTTTGTCATAATTCATAA 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79799063275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5