BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12270.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350417 jgi|Araly1|350417|fgenesh1_pg.C_scaffold_6001010 1670 0.0
> Ahg350417 jgi|Araly1|350417|fgenesh1_pg.C_scaffold_6001010
Length=1080
Score = 1670 bits (904), Expect = 0.0
Identities = 1028/1087 (95%), Gaps = 11/1087 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCTCACCACCGACGAAATCGAAGTGAGAGATTTCGTGGTGAACCAAAAGAATGGA 60
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTCCCACCACCGACGAAATCGAAGTGAAAGATTTCGTGGTGAAACAAAAGAATGGA 60
Query 61 GTGAAAGGACTCGTCGACTTTCTAACCCTAACCACACTTCCTTCTCCATACATTCAACCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAAAGGACTCGTCGACTTTCTAACCCTAACCACACTTCCTTCTCCATACATTCAACCT 120
Query 121 CCTCAAGAACGCTTCACTTCCGACAAGATCCTCCTCGGATCACCTGTCCCGGTCATTGAC 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CCTCAAGAACGCTTCACTTCCGACAAGATCCTCTTCGGATCACCTGTCCCGGTCATTGAC 180
Query 181 GTGTCCAATTGGAATGAACCGCACGTGGCTAGAGAGATCTGCCATGCAGCGTCAAAGCTC 240
||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |
Sbjct 181 GTGTCCAATTGGAATGACCCGCACCTGGCTAGAGAGATCTGCCATGCAGCGACAAAGTTG 240
Query 241 GGCTTGTTTCAGATAGTGAACCACGGGATAGCTCCGGCTGAGTTCAAGGGTGTGATTGCT 300
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 241 GGTTTGTTTCAGATAGTGAACCACGGGATAGCTCCGGCGGAGTTGAAGGGTGTGATTGCG 300
Query 301 GCGGCGCGTGGGTTTTTCGAGTTGCCGGCGGAGGAGAGAAGAAGGTATTGGAGAGGGAGT 360
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 301 GCGGCGCGTGGGTTTTTCGAGTTGCCGGCCGAAGAAAGAAGAAGGTATTGGAGAGGGAGT 360
Query 361 TCAGTGTCGGAGACGGCGTGGTTGACCACAAGTTTCAATCCTTGCATAGAA-AGTGTTTT 419
|| |||||||||||||||||||||||||||||||||||||||| || || | || |||||
Sbjct 361 TCGGTGTCGGAGACGGCGTGGTTGACCACAAGTTTCAATCCTTACA-AGGAGAGAGTTTT 419
Query 420 GGAATGGAGAGATTTCCTCAAGTTTGAGTATCTTCCTCAACGACATGACTTCGCTGCCAC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GGAATGGAGAGATTTCCTCAAGTTTGAGTATCTTCCTCAACGACACGACTTCGCTGCCAC 479
Query 480 GTGGCCTTCTGTCTGCAAGGAACAAGTGATAGACCATTTCAA-AAGGATCAAACCAATCA 538
||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 480 GTGGCCTTCCGTCTGCAAGGAACAAGTGATAGACCACTTCAAGAAG-ATCAAACCAATCA 538
Query 539 CAGAGAGGATCTTAAACATACTCATCAACAATCTAAACACAATCATCGATGAGTCCAATA 598
|||||| ||||||||||||||||||||||||||||||| || |||| || ||||||||||
Sbjct 539 CAGAGAAGATCTTAAACATACTCATCAACAATCTAAACTCAGTCATTGACGAGTCCAATA 598
Query 599 AAGAAACCCTAATGGGAACAATGAGAATGAACTTCAACTACTATCCGAAATGTCCTGAGC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGAAACTCTAATGGGAACAATGAGAATGAACTTCAACTACTATCCGAAATGTCCTGAGC 658
Query 659 CAAGCCTGGCCATAGGAACTGGTCGCCACTCAGACATCAACACTCTCACTCTCCTCCTAC 718
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 659 CAAGCCTGGCCATAGGAACTGGTCGCCACTCAGACATCAACACTATCACTCTCCTCCTGC 718
Query 719 AAGAAGATGGTGTATTAAGCAGTCTTTACGCCCGAGCCACTGAGGATGGAGACAAATGGA 778
||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 719 AAGAACACGGTGTATTAAGCAGTCTTTACGCCCGAGCCACCGAGGATGGTGACAAATGGA 778
Query 779 TTCATGTCCCTCCAATTCCGGGAGCTATTG-TCGTTAATATCGGAGATGTATTACAGATA 837
|| |||||||||||||| | ||||| |||| | |||||||| ||||||||||||||||||
Sbjct 779 TTAATGTCCCTCCAATTGCTGGAGCAATTGCT-GTTAATATTGGAGATGTATTACAGATA 837
Query 838 TTGAGCAATGATAGGTATAGGAGCGTGGAGCATTGTGTGGTGGTCAATAAGTATTGTAGC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TTGAGCAATGATAGGTATAGGAGCGTGGAGCATTGTGTGGTGGTCAATAAGTGTTGTAGC 897
Query 898 CGGGTTTCCATTCCGGTTTTCTGCGGACCGGTTCATGATTCGGTTATTGAGCCGTTACC- 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGGGTTTCCATTCCGGTTTTCTGCGGACCGGTTCATGATTCGGTTATTGAGCCGTTACCA 957
Query 957 GGAGGTGTTAGATAAGAACAATGAGATGGCTCGGTATAGAAAGATTGTGTATTCGGACTA 1016
|| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 958 GG-GGTGTTAGA---GAACAATGAGATGGCTCGGTATAGAAAGACTGTGTATTCAGACTA 1013
Query 1017 CTTGAAGtttttttttGGAAGACCTCATGATGGAAAGAAGACTATTGAGTCGATAAAATT 1076
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 TTTGAAGGGTTTTTTTGGAAGACCTCATGATGGAAAGAAGACTATTGAGTCGATCAAATT 1073
Query 1077 ACCATGA 1083
||||||
Sbjct 1074 CCCATGA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5