BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12280.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350449 jgi|Araly1|350449|fgenesh1_pg.C_scaffold_6001042 944 0.0
Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717 294 9e-79
Ahg911261 jgi|Araly1|911261|Al_scaffold_0001_1515 279 2e-74
Ahg920730 jgi|Araly1|920730|scaffold_102011.1 63.9 3e-09
> Ahg350449 jgi|Araly1|350449|fgenesh1_pg.C_scaffold_6001042
Length=747
Score = 944 bits (511), Expect = 0.0
Identities = 578/609 (95%), Gaps = 10/609 (2%)
Strand=Plus/Plus
Query 352 GTTAGTGAATACCTTGCTAAGAATCAAGATGAAGGAGCTCAGG---------AACCTGAA 402
|||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GTTACTGAATACCTTGCTAAGAATCAAGATGAAGGAGCTCAGGATATTCATCAACCTGAA 180
Query 403 GCTCCAGCTACCCTTAAAGGTGATGCACAACACTATCGCCGGCCTTTTCTTTTAAGCGAT 462
||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||||| |||
Sbjct 181 GCTCCAGCTACTCTTAAAGGTGATGCACAACACTATCTCCGGCCTCTTCCTTTAAGGGAT 240
Query 463 CCGGCTCCCAAGTTCCCAGATTATGTTCTCCCTGAAGGATATACTATAGAGGATGTTGAT 522
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CCGGCTTCCAAGTTCCCAGATTATGTTCTCCCTGAAGGATATACTATAGAGGATCTTGAT 300
Query 523 ACTATTTTTCTCACAGCGCAGATTGTGGGTCGGTACGGGGAGGAATTTTGGTTGGATTTG 582
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 301 ACTATTATTCTCACAGCGCAGTTTGTGGGTCGGTACGGGGCGGAATTTTGGTTGGATTTG 360
Query 583 ATCAAGGAAGTGGATAACAAACCTCAGTTTGAGTTTTTGAAGCCAGCTGACAGCAAGTTC 642
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGAAGGAAGTGGATAACAAACCTCAGTTTGAGTTTTTGAAGCCAGCTGACAGCAAGTTC 420
Query 643 GATTATTTCAATCGGCTTTCTGTTGTGGCTTCGGAAGGACTAAAGCGATCCGAAAAGCTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTATTTCAATCGGCTTTCTGTTGTGGCTTCGGAAGGACTAAAGCGATCCGAAAAGCTG 480
Query 703 ACTAGTTCTCGTATGGCGATTGTTAGTAAGGCTTTTTTCTACCATCTTCGTCGTCAAAAT 762
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 481 ACTAGTTCTCGTATGGCGATTGTTATTAAGGCTTTTTTCTACCATCTTCGTCGTAAAAAG 540
Query 763 GAAAAGCGGGAGTTGACCCACAAGGAGGGAGCGGCAAAGGCTTGTACTCTGTTTGGTGCT 822
|||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 541 GAAAAGCGGGTGTTGAGCCACAAGGAGGGAGCGGCAAAGGCTAGTACTGTGTTTGGTGCT 600
Query 823 TTGTATGCTTTTGTGGGTCCTGATGGCTGCTTTGCTGACATCAAGGACGAAGATTTGCCA 882
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTATGCTTTTGTGGGTGCTGATGGCTGCTTTGCTGACATCAAGGACGAAGATTTGCCA 660
Query 883 CTACTTCAACACCCTTCAGCGATCAAGAACATACTAACAAAGCTGCAGCCTCGTATGCCT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTACTTCAACACCCTTCAGCGATCAAGAACATACTAACAAAGCTGCAGCCTCGTATGCCT 720
Query 943 CCGCTTggg 951
|| || |||
Sbjct 721 CCACT-GGG 728
> Ahg313937 jgi|Araly1|313937|fgenesh1_pm.C_scaffold_1002717
Length=2337
Score = 294 bits (159), Expect = 9e-79
Identities = 243/284 (86%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 971 AGTTTGACGAGTCTGTCCTTGTTCCAGAAGACCAGTTTCTTGCTCAACATCCGGGTTCCT 1030
|||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2027 AGTTCGACGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGT-CCG 2085
Query 1031 -CAACGATCATGGTTTCTGTTCCAGACCCCGATGATTGGAAAGTCGTTAAGATCACAGTG 1089
| || |||| ||||||| | ||| || |||||| || ||||| || |||||||||||
Sbjct 2086 GCTACAATCAGGGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAGTG 2145
Query 1090 CAGTCGCTATCGGAAAACGTGGCAAGTTTGAAGGAGAAAATATCTGGCGAGATCCAATTT 1149
||||| |||| |||||||||| ||||||||||||||||||| |||| ||||| ||| ||
Sbjct 2146 CAGTCATTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATACAAATT 2205
Query 1150 CCTA-CAAACAAACAGAAGTTACGTGGAAAAGCCGGATTCTTAAAGGACAACACGTCGCT 1208
|| | |||||||||||||| || |||||||||| || |||||||||||||||| ||||||
Sbjct 2206 CC-AGCAAACAAACAGAAGATAAGTGGAAAAGCTGGGTTCTTAAAGGACAACATGTCGCT 2264
Query 1209 TGCACATTACAACGTGGGAGCAGGTGAAATCTTAACACTGTCTT 1252
||| |||||||| || |||||||| |||||| ||||| ||||||
Sbjct 2265 TGCGCATTACAATGTCGGAGCAGGAGAAATCCTAACATTGTCTT 2308
> Ahg911261 jgi|Araly1|911261|Al_scaffold_0001_1515
Length=2337
Score = 279 bits (151), Expect = 2e-74
Identities = 238/279 (85%), Gaps = 10/279 (4%)
Strand=Plus/Plus
Query 979 GAGTCTGTCCTTGTTCCAGAAGACCAGTTTCTTGCTCAACATCCGGGTTCCT-CAACGAT 1037
||||| | |||||||||||||||||||||||||||||| |||||||| || | || ||
Sbjct 2035 GAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGTATCCGGGT-CCGGCTACAAT 2093
Query 1038 CATGGTTTCTGTTCCAGACCCCGA-TGATTGGA-AAGTCGTTAAGATCACAGTGCAGTCG 1095
|| ||||||| ||| || || |||| ||| ||||| | |||||||||||||||||
Sbjct 2094 CAGGGTTTCTAAGCCAAACGA-GAATGAT-GGACAAGTCATGGAGATCACAGTGCAGTCG 2151
Query 1096 CTATCGGAAAACGTGGCAAGTTTGAAGGAGAAAATATCTGGCGAGATCCAATTTCCTA-C 1154
|||| ||||| |||| ||||||||||||||||||| |||| ||||| ||| |||| | |
Sbjct 2152 TTATCCGAAAATGTGGGAAGTTTGAAGGAGAAAATAGCTGGAGAGATGCAAATTCC-AGC 2210
Query 1155 AAACAAACAGAAGTTACGTGGAAAAGCCGGATTCTTAAAGGACAACACGTCGCTTGCACA 1214
|||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 2211 AAACAAACAGAAGTTAAGTGGAAAAGCTGGATTCTTAAAGGACAACATGTCACTTGCACA 2270
Query 1215 TTACAACGTGGGAGCAGGTGAAATC-TTAACACTGTCTT 1252
|||||| ||||||||||| |||||| ||| |||||||||
Sbjct 2271 TTACAATGTGGGAGCAGGAGAAATCCTTA-CACTGTCTT 2308
> Ahg920730 jgi|Araly1|920730|scaffold_102011.1
Length=1115
Score = 63.9 bits (34), Expect = 3e-09
Identities = 45/50 (90%), Gaps = 2/50 (4%)
Strand=Plus/Plus
Query 973 TTTGACGAGTCTGTCCTTGT-TCCAGAAGACCAGTTTCTTGCTCAACATC 1021
|||||||| || | |||| | |||||||||||||||||||||||||||||
Sbjct 865 TTTGACGAATCAGCCCTT-TCTCCAGAAGACCAGTTTCTTGCTCAACATC 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5