BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12290.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488073 jgi|Araly1|488073|fgenesh2_kg.6__1207__AT5G12290.1 3349 0.0
Ahg952048 jgi|Araly1|952048|scaffold_34000002.1 416 3e-115
Ahg949040 jgi|Araly1|949040|scaffold_800927.1 416 3e-115
Ahg906399 jgi|Araly1|906399|Al_scaffold_0003_3527 366 3e-100
> Ahg488073 jgi|Araly1|488073|fgenesh2_kg.6__1207__AT5G12290.1
Length=2102
Score = 3349 bits (1813), Expect = 0.0
Identities = 2009/2104 (95%), Gaps = 11/2104 (1%)
Strand=Plus/Plus
Query 12 ACCGACGTTAAGGGCACTAACGACTCCGTCTCCGGTCATAAACCCGGCGAGTGGTGAACT 71
|||||| |||||||||||| | ||||||||||||||||||||||||| || ||||||||
Sbjct 1 ACCGACATTAAGGGCACTAGCTCCTCCGTCTCCGGTCATAAACCCGGCCAGAGGTGAACT 60
Query 72 GAGAAAATTGATAGCCGACTACAATGGATTCGCAACCTCCGGTTAACGAGTCAACCCCGT 131
|||||||||||| | ||||| |||||||||| || ||||||| ||||||||||| |||||
Sbjct 61 GAGAAAATTGATTGTCGACTTCAATGGATTCTCAGCCTCCGGCTAACGAGTCAATCCCGT 120
Query 132 CGACGGCGCTGTCAAACTTCGGAGAGCTAGTTCCATTTTATTCGAGTTACCTTTGGAATC 191
||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 CGACGGCGCTGTCAAACGTCGGAGAGCTAGTTCCTTTTTATTCCAGTTACCTTTGGAATC 180
Query 192 GCCTTGCTTCCTTGTTGCCTACTTCCAAACCCATTTTTCTCGGGAAAATCTCCAATCTCT 251
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GCCTTGCTTCCTTGTTGCCTACTTCCAATTCCATTTTTCTCGGGAAAATCTCCAATCTCT 240
Query 252 ATCGCCAAACAGTTTCGAGAAAACGAAGTATTTCATTTCCTCTTCCTCTACCCTCCGATT 311
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 ATCGCCAAACAGTTTCGAGAAAACGAAGTATTTCTTTTCCTCTTCCTCTACCCTCCGATT 300
Query 312 TCCCAAGTTCTTCTACAATTACAAGCAATGTCTCTGCGGATACAGCTAGGATTCATGGTG 371
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TCCCAAATTCTTCTACAATTACAAGCAATGTCTCTGCGGATACAGCTAGAATTCATGGTG 360
Query 372 TGTTGGAGGAAATTATGGCTGACGTTCTCTCGAATTTGCATGATATTCAGAAAAGTTTAG 431
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TTTTGGAGGAAATTATGGCTGACGTTCTCTCGAATTTGCATGATATCCAGAAAAGTTTAG 420
Query 432 ATTTTTGGCGATCTAGAGCTGAGGGTTCCAATGCTCGAAAAGCGTACTTCATGATTTTTG 491
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 421 ATTTTTGGCGATCTAGAGCTGAGGGTTCCAATGCACGAAAAGCTTACTTCATGATTTTTG 480
Query 492 AGAGAGGACCAACAGCTTTTGTGAACGAGAGTACGAAGTTCGTGAGCAAAAGTCTCAGTG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AGAGAGGACCAACAGCTTTTGTGAACGAGAGTACGAAGTTCGTGAGCAAAAGTTTCAGTG 540
Query 552 AGGATTCTGCGATGCAGCATCTTTGTCAGTCATCTTCGTCTCACATGACAGAGAGGATGC 611
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 541 AGGATTCTGCGATGCAGCATCTTTGTCAGTCATCTTCATCTCACATGACGGAGAGGATGC 600
Query 612 GGGTCTTGGTGGAGTTAAGATCTGCACTCGCGTCCTTTATTGCCCAGCTTTATGTTGAGT 671
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
Sbjct 601 GGGTCTTGGTGGAGTTAAGATCTGCACTCGCTTCCTTTCTTGCTCAGCTTTATGTTGAAT 660
Query 672 TGGATAAACGTGGAGAGGATCTTGTGAAGATTCCAGAAAAGGCACTGCCATCATTGTTGG 731
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 661 TGGATAAACGTGGAGAGGATCTTGTGAAGAATCCAGAAAAGTCACTGCCATCATTGTTGG 720
Query 732 CTGTTATCAATGGATTGTTTTCGAACCTGGAGGGATCTTTCAGCCATTTGCATGCTGTGC 791
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 721 CTGTTATCAATGGATTGTTTTCGAACCTGGAGGGATCTTTCACCCATTTGCATGCTGAGC 780
Query 792 GTGAGTGTGATTCTTCTGTTGATGGAAGTTACCCAATGCCTCTTGTATTTGATCGACTGC 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGAGTGTGATTCTTCTGTTGATGGAAGTTACCCAATGCCTCTTGTATTTGATCGACTGC 840
Query 852 CTGAAGTTAATGAAGAAGGATCCCAGTGGACTGATTGTGAACTTACAGATGCAATCAACC 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGAAGTTAATGAAGAAGGATCCCAGTGGACTGATTGTGAACTTACAGATGCAATCAACC 900
Query 912 TGGTTCATAAAAATTTGGAAAAACTTAACTCATATTTATCAGTTATGGTAGGGAAACATC 971
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGCGCATAAGAATTTGGAAAAACTTAACTCATATTTATCAGTTATGGTAGGGAAACATC 960
Query 972 GGAAGCCAAGGAGGATGACCCTGTACTGGGTCCGGTATACATGTGGTGCAGTTGGGCTCT 1031
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 GGAAGCCAAGGAGGATGACCCTGTACTGGGTCCGGTATACGTGTGGTGCAGTTGGGCTCT 1020
Query 1032 CTGTTTTCTCTATATGGCTACTACGTCATAGTAGTTTGATGGGAAGTTCGGATATAGAGA 1091
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1021 CTGTTTTCTCTATATGGCTTCTACGTCATAGCAGTTTGATGGGAAGTTCGGATATCGAGA 1080
Query 1092 ATTGGGTTCATGATGCAAAAGAAGCAACGATGAGCTTCTTTAGTGATCATGTTGAGCAAC 1151
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1081 ATTGGGTTCATGATGCAAAAGAAGCAACAATGAGCTTCTTTAGTGATCATGTTGAGCAAC 1140
Query 1152 CGCTGCTTTCCATTCGCGATGAGCTTTTTGATACTTTTCGGAAAAGGCACAAGGGTGTTA 1211
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 CGCTGCTTTCCATTCGGGATGAGCTTTTTGATACTTTCCGGAAAAGGCACAAGGGTGTTA 1200
Query 1212 TGGAAACTGAAGAAGTGCAGCTGACGCAAGATTCACTCCACAGAATGCTTCGGAATTTCT 1271
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1201 TGGAAACTGAAGAAGTGCAGCTGACGCAAGATTCACTGCATAGAATGCTTCGGAATTTCT 1260
Query 1272 GCGAGCAGGCTACACGTGAAAAGGTCCCGGATAATGCATCTGATCAGGAGATGCTCGAGG 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 GCGAGCAGGCTACACGTGAAAAGGTCCCGGATAATGCATCTGATCAGGAGATGCTTGAGG 1320
Query 1332 TTGTTATGAATAGGTATGAAAAAGAACTTGTGCACCCTATTCACAACCTCCTTAGTGGAG 1391
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 1321 TTGTTATGAATCGGTATGAAAAGGAACTTGTGCATCCTATTCACAACCTCCTTAGCGGAG 1380
Query 1392 AGCTTGCCCGTGGTTTGCTTATTCAGGTCCAAAAGCTTAAACTGGATATAGAAACAGCGA 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGCTTGCCCGTGGTTTGCTTATTCAGGTCCAAAAGCTTAAACTGGATATAGAAACAGCGA 1440
Query 1452 TGCTTGAACTGGATCAGATACTCCGTGCAAATGAAATAAACTTTGCCATTCTGGCTGCAT 1511
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1441 TGCTTGAACTGGATCAGATACTCCGTGCAAACGAAATAAATTTTGCCATTCTGGCCGCAT 1500
Query 1512 TACCTGCATTCTTTCTCAGCATTGTTATGCTTACAGTGCTTCGGACCTGGCTTAAAAAGG 1571
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1501 TACCTGCATTCTTTCTTAGCATTGTTATGCTCACAGTGCTTCGGACCTGGCTTAAAAAGG 1560
Query 1572 ATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCGTTG 1631
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1561 ATAGCAAAGCTCAAGGACGAGGAAGGATTGCTCGTATTCACAGGAGACTACTAGTCGTTG 1620
Query 1632 AAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGGACG 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGGACG 1680
Query 1692 CAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTGAGA 1751
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1681 CAGAAACCGTATTTGGCTTGCTAATATACAGCCTGGAACGTTTGTATCGAGTTGTTGAGA 1740
Query 1752 AACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAGGAA 1811
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1741 AACCTGCAAGAGCAACTGACGAGTGGGATCTAGTGAAACAAGATCTGATCGAGTTAGGAA 1800
Query 1812 GGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTAACGGTTTATG 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTAACGGTTTATG 1860
Query 1872 ACTGCTTGCTTCCCACTCTGAAGCGACAATAACTCATCTCGG-TTTCTTAATCTACTTTA 1930
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||
Sbjct 1861 ACTGCTTGCTTCCCACTCTCAAGCGACAATAACTCATCTCGGGTTT-TTAATCTGCCTTA 1919
Query 1931 TGAAATCCCAATTGTATTCAATCATTCCTCCAAAAATGCTTGCTTGAGGGCCACTTT--- 1987
|||||| || ||| |||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1920 TGAAATGCCGATTTTATTCAATCATTCCTCCAGAAATACTTGCTTGAGGCCCACTTTAGA 1979
Query 1988 -T----GGTACTAAGCCAAAACCtttttttCCTTGAAATGGTATAACAAGGCTACACATA 2042
| ||||| ||||||||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct 1980 GTTTTTGGTACCAAGCCAAAACCTTTTTT-CCTTGAAATGGTAAAACAAAGTTACACATA 2038
Query 2043 GAAGATAGTTTTGAAATTCATGATCTATGTTGCAATTTAAGATATCAAAACCTATTTTGT 2102
| |||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||
Sbjct 2039 GGAGATAGTTTTGAAATTCATGATCTGTGCTGCAATATAAGATATCAAAACCTGTTTTGT 2098
Query 2103 GGTC 2106
||||
Sbjct 2099 GGTC 2102
> Ahg952048 jgi|Araly1|952048|scaffold_34000002.1
Length=430
Score = 416 bits (225), Expect = 3e-115
Identities = 257/273 (94%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 1569 AGGATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCG 1628
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 28 AGGATAGCAGAGCTCAAGGACGAGGAAGGATTGCTCGTATTCACAGGAGACTACTTGTCA 87
Query 1629 TTGAAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGG 1688
|||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 88 TTGAAACTGAAAAGAGAATTATGCAATATCAGAGCTATATTGAAGAAGGACGTGATAAGG 147
Query 1689 ACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTG 1748
| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 148 ATGCAGAAACCGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTATCGGGTTGTCG 207
Query 1749 AGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAG 1808
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 208 AGAAACCTGCAAGAGCAACCGACGACTGGGATTTAGTGAAACAAGATCTTATTGAGTTAG 267
Query 1809 GAAGGCCACAGCAGCAAACATCATACAAGCTAA 1841
||||||||||||| |||||||||||||||||||
Sbjct 268 GAAGGCCACAGCATCAAACATCATACAAGCTAA 300
> Ahg949040 jgi|Araly1|949040|scaffold_800927.1
Length=430
Score = 416 bits (225), Expect = 3e-115
Identities = 257/273 (94%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 1569 AGGATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCG 1628
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 28 AGGATAGCAGAGCTCAAGGACGAGGAAGGATTGCTCGTATTCACAGGAGACTACTTGTCA 87
Query 1629 TTGAAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGG 1688
|||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 88 TTGAAACTGAAAAGAGAATTATGCAATATCAGAGCTATATTGAAGAAGGACGTGATAAGG 147
Query 1689 ACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTG 1748
| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 148 ATGCAGAAACCGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTATCGGGTTGTCG 207
Query 1749 AGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAG 1808
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 208 AGAAACCTGCAAGAGCAACCGACGACTGGGATTTAGTGAAACAAGATCTTATTGAGTTAG 267
Query 1809 GAAGGCCACAGCAGCAAACATCATACAAGCTAA 1841
||||||||||||| |||||||||||||||||||
Sbjct 268 GAAGGCCACAGCATCAAACATCATACAAGCTAA 300
> Ahg906399 jgi|Araly1|906399|Al_scaffold_0003_3527
Length=222
Score = 366 bits (198), Expect = 3e-100
Identities = 215/223 (96%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1682 GATAAGGACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGA 1741
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1 GATAAGGACGCAGAAACCGTATTTGGCTTGCTAATATACAGCCTGGAACGTTTGTATCGA 60
Query 1742 GTTGTTGAGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATC 1801
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTTGAGAAACCTGCAAGAGCAACTGACGAGTGGGATTTAGTGAAACAAGATCTGATT 120
Query 1802 GAGTTAGGAAGGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTTAGGAAGGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTA 180
Query 1862 ACGGTTTATGACTGCTTGCTTCCCACTCTG-AAGCGACAATAA 1903
|||||||||||||||||||||||||||| | ||||||||||||
Sbjct 181 ACGGTTTATGACTGCTTGCTTCCCACTC-GCAAGCGACAATAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5