BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12300.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488074 jgi|Araly1|488074|fgenesh2_kg.6__1208__AT5G12300.1 2036 0.0
> Ahg488074 jgi|Araly1|488074|fgenesh2_kg.6__1208__AT5G12300.1
Length=1341
Score = 2036 bits (1102), Expect = 0.0
Identities = 1296/1382 (94%), Gaps = 43/1382 (3%)
Strand=Plus/Plus
Query 1 AAAGCAAAAGCTACTCTTGCTTCATTAACACTTCTCTTTCTCTCATGACTTCCCTTTGAG 60
||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 AAAGCTAAAGCTACTCTTGCTTCACTAACACTTCTCTTTCTCTCTTGACTTCCCTTTGAG 60
Query 61 GTTATGTTACTGTGTTCAGCTTCAGACTCATTTTAAACGTTAAACCATCTACAGctttat 120
|| ||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 61 GTCATGCTAC--TGTTCAGCTTCAAACTCATTTTAAACGTTAAACCATCTAC-GCTTTAT 117
Query 121 cttggttctctctttctttgataatttctctgttttttcttctatggaatctctGAAACA 180
| |||||||||||||||||| | ||||||||||||||||||
Sbjct 118 CGTGGTTCTCTCTTTCTTTG---A------------------TATGGAATCTCTGAAACA 156
Query 181 AGCTTCTTCTGCTTCTGGGTTCTGCTACCACCAAGGCTTCTCAGGTGTTCTCCAAGTGTA 240
|| | | | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 157 AG---C-T-T-CTTCTGGGTTCTGCTACCATCAAGGCTTCTCAGGTGTTCTCCAAGTGTT 210
Query 241 TGTTCACAACGCAAGAAACATCAACAACATCTGCATCTACGATAACCAAGACGTCTACGC 300
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 211 TGTTCACAACGCAAGAAACATCCACAACATCTGTATCTACGATAACCAAGACGTCTACGC 270
Query 301 CAAATTCTCTCTCACATACAATCCTGACGATACCATCTCCACCAGAATCATCCATAGAGC 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 271 CAAATTCTCTCTCACATACAATCCTGACGATACCATCTCCACTAGAATCATCCACAGAGC 330
Query 361 TGGCAAAAACCCTGAATTCAACCAGAAGCTTATGATCGATGTAACTCAGATCGATGCTCA 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 331 AGGCAAAAACCCTGAATTCAACCAGAAGCTTATGATCGATGTGACTCAGATCGATGCCCA 390
Query 421 TGCTGCAGTTCTCAAATGTGAGATCTGGATGATGAGCAGAGCCAGACATTACATGGAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TGCTGCAGTTCTCAAATGTGAGATCTGGATGATGAGCAGAGCCAGACATTACATGGAAGA 450
Query 481 TCAGCTTCTTGGTTTCGCTCTTGTCCCAATCTCAGACATCATAGGTCAAGACAGTGTAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TCAGCTTCTTGGTTTCGCTCTTGTCCCAATCTCAGACATCATAGGTCAAGACAGTGTAAC 510
Query 541 TCAAGACTACAGTCTCTCCTCCACTGATCTCTTCCATTCCCCTGCTGGTACCGTGAAGCT 600
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCAAGACTACAGTCTTTCCTCAACTGATCTCTTCCATTCCCCTGCTGGTACCGTGAAGCT 570
Query 601 CACGCTTTCCATTGTTAACCCTTCTTCTACTTCTTCATCTAATCCCAAGATTAACACCAC 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 CACGCTTTCCATTGTTAACCCTTCCTCTACTTCTTCATCTAATCCCAAGATTAACACCAC 630
Query 661 TTCGATTTCTTCCGAGGTCGTGTTGCTTGACCCTCAAGTCTCTGAAACAGTAGATTACAC 720
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 631 GTCGATTTCTTCCGAGGTCGTGTTGCTTGACCCACAGGTCTCTGAAACAGTAGATTACAC 690
Query 721 GAGGATTGAGTTCCCTGACATCAATGTTGCTAACGAGAACAAACAGATGGTTACAGAGTA 780
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 691 GAGGATCGAGTTCCCTGACATCAATGTTGTTAACGAGAACAAACAGATGGTTACAGAGTA 750
Query 781 CTTCAATGAATCCGGAACCGGTTCATTTCTCTGTCTCGGCTCAACACATGGACCAGAAAC 840
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 751 CTTCAATGAATCCGGAACCGCTTCTTTTCTCTGTCTAGGCTCAACACATGGACCAGAAAC 810
Query 841 GGACATAACAATGGTGTGCTTGGAAGAAAAAGAGCTTTATGGGAATGGAAGCTTCATGGC 900
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 811 GGACATAACAATGGTGTGCTCGGAAGAAAAAGAGCTTCATGGAAATGGAAGCTTTATGGC 870
Query 901 TTCTTCTTCAACAACAACAAGCTTAAGCGACGAAAAGAACACAGCAGATTCAAACgagaa 960
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 871 TTCTTCTTCAACAACAACAAGCTTAAGCGACGACAAGAACACAGCAGATTCAAACGAGAA 930
Query 961 agagaatcgagagataacagaagtatcaagaagaagaagcaaagaaggtgaagaagaaga 1020
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 931 AGAGAATCGAGAGATCACAGAAGTATCAAGAAGAAGAAACAAAGAAGGAGAAGAAGAAGA 990
Query 1021 ggaagagaataagatgaatgaagaaacaacaatgcagaaacagatagcagagaTGTATAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GGAAGAGAATAAGATGAATGAAGAAACAACAATGCAGAAACAGATAGCAGAGATGTATAT 1050
Query 1081 GAGAAGTATGCAACAGTTCACTGAGTCTTTGGCAAAGATGAAACTTCCCATGGATCTTCA 1140
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1051 GAGAAGTATGCAACAGTTCACTGAGTCTTTGGCAAAAATGAAGCTTCCCATGGATCTTCA 1110
Query 1141 TAATAAACCACACGAGGAAGATCACAGTAACAATAACAACAACACTGCAACAC-AGATTC 1199
||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||
Sbjct 1111 TAATAAACCACACGAGGAAGATCACAGTAACAA---CAACAACACTGCAACTCCA-ATTC 1166
Query 1200 AGAATCAGAATAATAATGCTAATAATAATGGTATGGAGAAGAAAAAAGAAGGGTCTCGTG 1259
| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1167 AAAATCAGAATAATAAT---AATAGTAATGGAATGGAGAAGAAAAAAGAAGGGTCTCGTG 1223
Query 1260 TGTTTTACGGTAGCAGGGCATTCTTTTAATGGAATCAACAACAACAACATTGCAAATAAG 1319
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1224 TGTTTTACGGTAGCAGAGCATTCTTTTAATGGAATCAACAACAACA---TTGCAAATAAG 1280
Query 1320 TTGTTTAACATTTTAGCTTCTTCTATGTTTGATTCCCATAATCTTCCCT-CAACCAATTT 1378
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 1281 TTGTTTAACATTTTAGCTTCTTCTATGTTTGATTCACATAATCTTCC-TACAACCAATTT 1339
Query 1379 TT 1380
||
Sbjct 1340 TT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5