BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12310.1 Length=1373 Score E Sequences producing significant alignments: (Bits) Value Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1 1557 0.0 Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1 422 4e-117 > Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1 Length=1345 Score = 1557 bits (843), Expect = 0.0 Identities = 979/1041 (94%), Gaps = 24/1041 (2%) Strand=Plus/Plus Query 346 CGCCATGAGTTCCTCGATCCAGATCGTTGTTGAGGAGAAGCAAGTGGATGTTTTG-C-C- 402 |||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| | | Sbjct 316 CGCCATGACTTCCTCGATCCAGATC---GTTGATGAGCAGCAAGTGGATGTTTTGTCTCT 372 Query 403 TCTTCAAGATCAGGATGAAAAGAAGACTCCACAAGTGTTCAATGAGCTGAGTTTCGGGAA 462 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 373 TCATCAAGATCAGGATGAAAAGAAGACTCAACAAGTGTTCAATGAGCTGAGTTTCGGGAA 432 Query 463 CCATGGGGGCTGTTGTGCAATTTGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 522 |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 433 CCATGGCGGCTGTTGTGCTATATGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 492 Query 523 TAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAGGA 582 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 493 TAAAGGCTGTGAACATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAAGA 552 Query 583 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 612 Query 643 CGATGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 702 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 CGACGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 672 Query 703 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAACTATGA 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 673 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAATTATGA 732 Query 763 TTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACGATGACCTTGACGAGTT 822 |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 733 TTTCGATATTCCACCTGAGTATGAGGA------TGAGGACGACGATGACCTTGACGAGTT 786 Query 823 TTATATGCAAGGTTCAAGTCTTCGATTAGGAAACCGGAGGTGGGGTGACAATGGATTTGT 882 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 787 TTATATGCAAGGTTCAAGTCTTCGTTTAGGAAACCGGAGGTGGGGTGACAATGGATTCGT 846 Query 883 GAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGAACCGAGGTGGCCAGGCTTC 942 |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 847 CAGGGCAGGCCGCCAAGAAGCAAGGCCGGTTCAACATAAGAACCGAGGTGGACAGGCTTC 906 Query 943 TGGCTCTGAACCCGCCTCTTCATCCTCATGTGAGCCAAAGGAGAAGACTAGCAGTGCCAT 1002 ||||||||||||| | |||||||||||| |||||||||| || ||||||||||||||||| Sbjct 907 TGGCTCTGAACCCACTTCTTCATCCTCACGTGAGCCAAAAGATAAGACTAGCAGTGCCAT 966 Query 1003 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1026 Query 1063 AGTAGCAGCTGCAAAGCATGAGGCCCTTTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1122 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 1027 AGTAGCAGCTGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1086 Query 1123 GTATCTCTGTAATTACAT-CAACCCACCCCAACCCCAAATGACCAAATCCTTTGACTTCG 1181 |||| ||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| Sbjct 1087 GTATATCTGTAATTACATTCAACCCACCCCAACCCCAAATGGCCAAATCCATTGACTTCG 1146 Query 1182 ATACTTGAGAATCTGTACATCAGTAGAATTTAATAATGGTAGAAC--------TTGTTGA 1233 ||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct 1147 ATACTTGAGAATCTGTACATCAGTAGAATCTAATAATGTTAGAACCACAAAACTTGCTGA 1206 Query 1234 ACCTTTGTCGTTAAGATGCTTTGTGCTAGATTTGATTTATTTA-TCTGCAACTTTCTTGA 1292 | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || Sbjct 1207 ATCTTTGTCGTTAAGATGCTTTG--CTAGATTTGATTTATTTAGTCTGCAACTTTCTCGA 1264 Query 1293 TCACTTGCTTGATGAGTGAGAGATACTCTCGCTTATGATGTGGGAATTGATCATATGGAA 1352 ||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| Sbjct 1265 TCATTTGCTTGATGAGTGAGAGATACTGTGGCTTATGATGTGAGAATTGATCATATGGAA 1324 Query 1353 TGAAGATTAAGTGGTTATGGT 1373 ||||||||||||||||||||| Sbjct 1325 TGAAGATTAAGTGGTTATGGT 1345 Score = 381 bits (206), Expect = 7e-105 Identities = 288/325 (89%), Gaps = 15/325 (5%) Strand=Plus/Plus Query 1 ATAAATATTAATTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGGGAAGTCGTAATCGT 60 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATAAATATTATTTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGAGAAGTCGTAATCGT 60 Query 61 TAAATTAGGGTCTTC-C--CTTCTTCTTCTTCTACATCTCCTCAGCCGTTTCCTACGGAG 117 ||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||| Sbjct 61 TAAATTAGGGTCTTCTCTTCTTCATCTTCTTCTACATCTCCTCGGCCGTTTCCTACGGAG 120 Query 118 GATTCCGATCGATCCCTTTTCTCtttttttttttttCTTCTGGTCACCGAATCATTGTCA 177 |||||||||||||||||||||||||| || |||| |||||||||||| || ||| Sbjct 121 GATTCCGATCGATCCCTTTTCTCTTTATTCTTTT-------GGTCACCGAATCGTTCTCA 173 Query 178 TACCCCACTTTGAGCTCACAACTCTTCTTCCTCAGATTGCTTGATTAGGGTTTTCTTCTG 237 ||||| | ||||| ||| ||||||||||||||||||||||| ||||||||||||| |||| Sbjct 174 TACCC-ATTTTGAACTCGCAACTCTTCTTCCTCAGATTGCTAGATTAGGGTTTTCGTCTG 232 Query 238 CTTGCCGAATTGATTTCCAAGGAACAACTTTTTATTTATTTTCATCACCTAA-TCTTTCG 296 ||| ||| || |||||| |||||||||||| ||||||| ||||| ||| || ||||||| Sbjct 233 CTTACCGGATAGATTTCGGAGGAACAACTTTGTATTTATCTTCATTACC-AAGTCTTTCG 291 Query 297 TTTTCAGATTCC-GAGTATCCAAAT 320 |||||||||||| | | |||||||| Sbjct 292 TTTTCAGATTCCCGGG-ATCCAAAT 315 > Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1 Length=949 Score = 422 bits (228), Expect = 4e-117 Identities = 583/747 (78%), Gaps = 54/747 (7%) Strand=Plus/Plus Query 397 TTTGCCTCTTCAAGATCAGGATGAAAAGAAGACTCCA-CAAGTGTTCAATGAGCTGAGTT 455 |||| |||||||| ||||||| ||||||| | |||| ||| | || |||||| ||||| Sbjct 80 TTTGTCTCTTCAAAATCAGGACAAAAAGAA-AATCCAGGAAGAGATCCATGAGCCGAGTT 138 Query 456 TCGGGAACCATGGGGGCTGTTGTGCAATTTGCTTGGA-T-ACTATACCTCTTCAAGAAAC 513 ||||||| ||||| ||||||||||| || || || || | | || |||||||| ||||| Sbjct 139 TCGGGAATCATGGTGGCTGTTGTGCTATATG-TTTGAGTGA-AATTCCTCTTCAGGAAAC 196 Query 514 AGCTATGGTTAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAG 573 |||||||| ||||||||||| || ||||||||| || |||||||| |||||||| || Sbjct 197 TGCTATGGTGAAAGGCTGTGAACACATTTACTGTGTCACATGCATACTTCGTTGGGCGAG 256 Query 574 TTACAAGGAGAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCA 633 || ||| |||| ||||| ||||| |||||||||| ||| |||||||| |||| |||||| Sbjct 257 TTGCAAAGAGAGTCCTACATGCCCGCAATGTAAGCATCCTTTTGATTTCCTCAGTGTCCA 316 Query 634 CCGCGCTCTCGATGGAAGCGTTGAAGA-TTTCATGTTCGAGGAGAGTGTATGCCTCCTCC 692 | | || || ||||| ||| ||||||| |||| |||| ||||||||||| ||||| |||| Sbjct 317 CAGGGCACTTGATGGCAGCATTGAAGATTTTC-TGTTTGAGGAGAGTGTGTGCCTTCTCC 375 Query 693 TGAGGGCATCATGG-TTCCAGCCACTGGAAGCAGTGGAGC-GG-GT--TTCAGACAATGA 747 |||| || |||||| || | ||| |||| | ||||| | || || | ||| | ||| Sbjct 376 TGAGAGCCTCATGGTTTGTA-CCATTGGATGTGGTGGAACTGGCGTCGTACAG-CTATG- 432 Query 748 CAATTTCAACT-ATGATTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACG 806 || | | | ||||||| |||| | | || | | ||| | |||||||| | || | Sbjct 433 --GTTACCA-TGATGATTTTGACA-T-C-CC--A-TGTGACTACGAGGATGA--A-GATG 480 Query 807 ATGACCTTGACGAGTTTTATATGCAAGGTTCAAGTCTTCG-ATTAGGAAACCGGAGGTGG 865 |||||||||||||||||||| |||| || ||||| ||||| | ||||||| ||||| ||| Sbjct 481 ATGACCTTGACGAGTTTTATTTGCACGGCTCAAGACTTCGCA-TAGGAAATCGGAGATGG 539 Query 866 GGTGACAATGGATTTGTGAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGA-A 924 |||| |||||| ||||| || | || || |||||||| |||||||| | || ||| | Sbjct 540 GGTGGCAATGGTTTTGTCAGATCTGGGCGTCAAGAAGCCAGGCCAGT-C--CA-GAGATA 595 Query 925 CCGAGGTGGCCAGGCTTCTGGCT-CTGAACCCGCCTCT---TCATCCTCATGTGAGCCAA 980 | | ||| | | | ||| | | | | || | ||| ||||||||| ||||||| | Sbjct 596 CAGTGGT-TCTA-G-TTCCAGTTCCAGTTCCAG-TTCTGGGTCATCCTCAAGTGAGCCTA 651 Query 981 AGGAGAAG-A-CTAGCAG-TG-C---CATAACAGGAAGGCGTGCAAAGAGGGCAATGAAG 1033 |||| ||| | | | || || | || ||||||||||||||||||||||||||||||| Sbjct 652 AGGATAAGCAGGT-GAAGATGACAAACACAACAGGAAGGCGTGCAAAGAGGGCAATGAAG 710 Query 1034 CGTGAAGCTGCAAACAAAGCTGCGGAAGCAG-TAGCAGCTGCAAAGCATGAGGCCCTTTT 1092 ||||||||||| |||||||| ||||||| | | ||||| |||||||| ||||||| ||| Sbjct 711 CGTGAAGCTGCGAACAAAGCAGCGGAAGTAACT-GCAGCAGCAAAGCACGAGGCCCATTT 769 Query 1093 GGTTAGGTTGGGAAGGAAGTGACTGTG 1119 |||||||||||| ||||||||| |||| Sbjct 770 GGTTAGGTTGGGGAGGAAGTGAGTGTG 796 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51389692116 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5