BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12310.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1 1557 0.0
Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1 422 4e-117
> Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1
Length=1345
Score = 1557 bits (843), Expect = 0.0
Identities = 979/1041 (94%), Gaps = 24/1041 (2%)
Strand=Plus/Plus
Query 346 CGCCATGAGTTCCTCGATCCAGATCGTTGTTGAGGAGAAGCAAGTGGATGTTTTG-C-C- 402
|||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| | |
Sbjct 316 CGCCATGACTTCCTCGATCCAGATC---GTTGATGAGCAGCAAGTGGATGTTTTGTCTCT 372
Query 403 TCTTCAAGATCAGGATGAAAAGAAGACTCCACAAGTGTTCAATGAGCTGAGTTTCGGGAA 462
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 373 TCATCAAGATCAGGATGAAAAGAAGACTCAACAAGTGTTCAATGAGCTGAGTTTCGGGAA 432
Query 463 CCATGGGGGCTGTTGTGCAATTTGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 522
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 433 CCATGGCGGCTGTTGTGCTATATGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 492
Query 523 TAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAGGA 582
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 493 TAAAGGCTGTGAACATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAAGA 552
Query 583 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 612
Query 643 CGATGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 702
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CGACGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 672
Query 703 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAACTATGA 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 673 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAATTATGA 732
Query 763 TTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACGATGACCTTGACGAGTT 822
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 733 TTTCGATATTCCACCTGAGTATGAGGA------TGAGGACGACGATGACCTTGACGAGTT 786
Query 823 TTATATGCAAGGTTCAAGTCTTCGATTAGGAAACCGGAGGTGGGGTGACAATGGATTTGT 882
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 787 TTATATGCAAGGTTCAAGTCTTCGTTTAGGAAACCGGAGGTGGGGTGACAATGGATTCGT 846
Query 883 GAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGAACCGAGGTGGCCAGGCTTC 942
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 847 CAGGGCAGGCCGCCAAGAAGCAAGGCCGGTTCAACATAAGAACCGAGGTGGACAGGCTTC 906
Query 943 TGGCTCTGAACCCGCCTCTTCATCCTCATGTGAGCCAAAGGAGAAGACTAGCAGTGCCAT 1002
||||||||||||| | |||||||||||| |||||||||| || |||||||||||||||||
Sbjct 907 TGGCTCTGAACCCACTTCTTCATCCTCACGTGAGCCAAAAGATAAGACTAGCAGTGCCAT 966
Query 1003 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1026
Query 1063 AGTAGCAGCTGCAAAGCATGAGGCCCTTTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1122
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1027 AGTAGCAGCTGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1086
Query 1123 GTATCTCTGTAATTACAT-CAACCCACCCCAACCCCAAATGACCAAATCCTTTGACTTCG 1181
|||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1087 GTATATCTGTAATTACATTCAACCCACCCCAACCCCAAATGGCCAAATCCATTGACTTCG 1146
Query 1182 ATACTTGAGAATCTGTACATCAGTAGAATTTAATAATGGTAGAAC--------TTGTTGA 1233
||||||||||||||||||||||||||||| |||||||| |||||| ||| |||
Sbjct 1147 ATACTTGAGAATCTGTACATCAGTAGAATCTAATAATGTTAGAACCACAAAACTTGCTGA 1206
Query 1234 ACCTTTGTCGTTAAGATGCTTTGTGCTAGATTTGATTTATTTA-TCTGCAACTTTCTTGA 1292
| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1207 ATCTTTGTCGTTAAGATGCTTTG--CTAGATTTGATTTATTTAGTCTGCAACTTTCTCGA 1264
Query 1293 TCACTTGCTTGATGAGTGAGAGATACTCTCGCTTATGATGTGGGAATTGATCATATGGAA 1352
||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 1265 TCATTTGCTTGATGAGTGAGAGATACTGTGGCTTATGATGTGAGAATTGATCATATGGAA 1324
Query 1353 TGAAGATTAAGTGGTTATGGT 1373
|||||||||||||||||||||
Sbjct 1325 TGAAGATTAAGTGGTTATGGT 1345
Score = 381 bits (206), Expect = 7e-105
Identities = 288/325 (89%), Gaps = 15/325 (5%)
Strand=Plus/Plus
Query 1 ATAAATATTAATTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGGGAAGTCGTAATCGT 60
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATAAATATTATTTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGAGAAGTCGTAATCGT 60
Query 61 TAAATTAGGGTCTTC-C--CTTCTTCTTCTTCTACATCTCCTCAGCCGTTTCCTACGGAG 117
||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 61 TAAATTAGGGTCTTCTCTTCTTCATCTTCTTCTACATCTCCTCGGCCGTTTCCTACGGAG 120
Query 118 GATTCCGATCGATCCCTTTTCTCtttttttttttttCTTCTGGTCACCGAATCATTGTCA 177
|||||||||||||||||||||||||| || |||| |||||||||||| || |||
Sbjct 121 GATTCCGATCGATCCCTTTTCTCTTTATTCTTTT-------GGTCACCGAATCGTTCTCA 173
Query 178 TACCCCACTTTGAGCTCACAACTCTTCTTCCTCAGATTGCTTGATTAGGGTTTTCTTCTG 237
||||| | ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 174 TACCC-ATTTTGAACTCGCAACTCTTCTTCCTCAGATTGCTAGATTAGGGTTTTCGTCTG 232
Query 238 CTTGCCGAATTGATTTCCAAGGAACAACTTTTTATTTATTTTCATCACCTAA-TCTTTCG 296
||| ||| || |||||| |||||||||||| ||||||| ||||| ||| || |||||||
Sbjct 233 CTTACCGGATAGATTTCGGAGGAACAACTTTGTATTTATCTTCATTACC-AAGTCTTTCG 291
Query 297 TTTTCAGATTCC-GAGTATCCAAAT 320
|||||||||||| | | ||||||||
Sbjct 292 TTTTCAGATTCCCGGG-ATCCAAAT 315
> Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1
Length=949
Score = 422 bits (228), Expect = 4e-117
Identities = 583/747 (78%), Gaps = 54/747 (7%)
Strand=Plus/Plus
Query 397 TTTGCCTCTTCAAGATCAGGATGAAAAGAAGACTCCA-CAAGTGTTCAATGAGCTGAGTT 455
|||| |||||||| ||||||| ||||||| | |||| ||| | || |||||| |||||
Sbjct 80 TTTGTCTCTTCAAAATCAGGACAAAAAGAA-AATCCAGGAAGAGATCCATGAGCCGAGTT 138
Query 456 TCGGGAACCATGGGGGCTGTTGTGCAATTTGCTTGGA-T-ACTATACCTCTTCAAGAAAC 513
||||||| ||||| ||||||||||| || || || || | | || |||||||| |||||
Sbjct 139 TCGGGAATCATGGTGGCTGTTGTGCTATATG-TTTGAGTGA-AATTCCTCTTCAGGAAAC 196
Query 514 AGCTATGGTTAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAG 573
|||||||| ||||||||||| || ||||||||| || |||||||| |||||||| ||
Sbjct 197 TGCTATGGTGAAAGGCTGTGAACACATTTACTGTGTCACATGCATACTTCGTTGGGCGAG 256
Query 574 TTACAAGGAGAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCA 633
|| ||| |||| ||||| ||||| |||||||||| ||| |||||||| |||| ||||||
Sbjct 257 TTGCAAAGAGAGTCCTACATGCCCGCAATGTAAGCATCCTTTTGATTTCCTCAGTGTCCA 316
Query 634 CCGCGCTCTCGATGGAAGCGTTGAAGA-TTTCATGTTCGAGGAGAGTGTATGCCTCCTCC 692
| | || || ||||| ||| ||||||| |||| |||| ||||||||||| ||||| ||||
Sbjct 317 CAGGGCACTTGATGGCAGCATTGAAGATTTTC-TGTTTGAGGAGAGTGTGTGCCTTCTCC 375
Query 693 TGAGGGCATCATGG-TTCCAGCCACTGGAAGCAGTGGAGC-GG-GT--TTCAGACAATGA 747
|||| || |||||| || | ||| |||| | ||||| | || || | ||| | |||
Sbjct 376 TGAGAGCCTCATGGTTTGTA-CCATTGGATGTGGTGGAACTGGCGTCGTACAG-CTATG- 432
Query 748 CAATTTCAACT-ATGATTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACG 806
|| | | | ||||||| |||| | | || | | ||| | |||||||| | || |
Sbjct 433 --GTTACCA-TGATGATTTTGACA-T-C-CC--A-TGTGACTACGAGGATGA--A-GATG 480
Query 807 ATGACCTTGACGAGTTTTATATGCAAGGTTCAAGTCTTCG-ATTAGGAAACCGGAGGTGG 865
|||||||||||||||||||| |||| || ||||| ||||| | ||||||| ||||| |||
Sbjct 481 ATGACCTTGACGAGTTTTATTTGCACGGCTCAAGACTTCGCA-TAGGAAATCGGAGATGG 539
Query 866 GGTGACAATGGATTTGTGAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGA-A 924
|||| |||||| ||||| || | || || |||||||| |||||||| | || ||| |
Sbjct 540 GGTGGCAATGGTTTTGTCAGATCTGGGCGTCAAGAAGCCAGGCCAGT-C--CA-GAGATA 595
Query 925 CCGAGGTGGCCAGGCTTCTGGCT-CTGAACCCGCCTCT---TCATCCTCATGTGAGCCAA 980
| | ||| | | | ||| | | | | || | ||| ||||||||| ||||||| |
Sbjct 596 CAGTGGT-TCTA-G-TTCCAGTTCCAGTTCCAG-TTCTGGGTCATCCTCAAGTGAGCCTA 651
Query 981 AGGAGAAG-A-CTAGCAG-TG-C---CATAACAGGAAGGCGTGCAAAGAGGGCAATGAAG 1033
|||| ||| | | | || || | || |||||||||||||||||||||||||||||||
Sbjct 652 AGGATAAGCAGGT-GAAGATGACAAACACAACAGGAAGGCGTGCAAAGAGGGCAATGAAG 710
Query 1034 CGTGAAGCTGCAAACAAAGCTGCGGAAGCAG-TAGCAGCTGCAAAGCATGAGGCCCTTTT 1092
||||||||||| |||||||| ||||||| | | ||||| |||||||| ||||||| |||
Sbjct 711 CGTGAAGCTGCGAACAAAGCAGCGGAAGTAACT-GCAGCAGCAAAGCACGAGGCCCATTT 769
Query 1093 GGTTAGGTTGGGAAGGAAGTGACTGTG 1119
|||||||||||| ||||||||| ||||
Sbjct 770 GGTTAGGTTGGGGAGGAAGTGAGTGTG 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5