BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12320.1
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488076 jgi|Araly1|488076|fgenesh2_kg.6__1210__AT5G12320.1 870 0.0
Ahg929304 jgi|Araly1|929304|scaffold_301761.1 195 5e-49
Ahg905266 jgi|Araly1|905266|Al_scaffold_0003_2394 195 5e-49
Ahg896781 jgi|Araly1|896781|Al_scaffold_0005_747 189 2e-47
Ahg948288 jgi|Araly1|948288|scaffold_800175.1 172 2e-42
> Ahg488076 jgi|Araly1|488076|fgenesh2_kg.6__1210__AT5G12320.1
Length=571
Score = 870 bits (471), Expect = 0.0
Identities = 538/570 (94%), Gaps = 6/570 (1%)
Strand=Plus/Plus
Query 2 aaaaaaaaaaaGGAATCGGAC-AA-AA-ACCA-AGTGA-AACCAGAAACCCTCAGACTGA 56
||||||||||||||||||||| || || |||| ||| | ||||||||||||||||| |||
Sbjct 1 AAAAAAAAAAAGGAATCGGACAAATAACACCAGAGT-AGAACCAGAAACCCTCAGATTGA 59
Query 57 AATTGGTATTGGCCGGTGGAGGATGGGAGCAGAGACAAACGGAGTTGCAGAGAAAGTCGA 116
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||
Sbjct 60 AATTGGTATTGGCCGGTGGAGAATGGGAGCAGAAACAAACGTAGTTGCAGAGAAAGTTGA 119
Query 117 CGACTTGCTGGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA 176
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGACTTGCTTGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA 179
Query 177 TGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAACAGCCCTGCATATGGCCGCAGC 236
|||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 180 TGGTGTCTCTCTTGACTCTCGTGATTCACAAGGCCGTACAGCCCTGCATATGGCCGCGGC 239
Query 237 GAATGGACATATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCT 296
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 240 GAATGGACATATGACTATAGTGGAGTATCTTATCAGTCAAGGAGTGGATATTAATGCTCT 299
Query 297 TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAGGTGGT 356
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 300 TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCGTGTTGAGGTGGT 359
Query 357 AAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGAACTCC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGGACTCC 419
Query 417 AATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT 476
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATGGATGAAGCCATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT 479
Query 477 TGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTCAGACAACTTCATCCTCA 536
||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 480 TGCACAAATGGAACTTGAAAATACCAGTGTGACATGACTTTTCAGACATCTTCATCCTCA 539
Query 537 GCATCCTAAATGTTTTCTCTCTGTCTCTCT 566
|||||||||||||| ||| || ||| ||||
Sbjct 540 GCATCCTAAATGTTCTCTTTCCGTCCCTCT 569
> Ahg929304 jgi|Araly1|929304|scaffold_301761.1
Length=478
Score = 195 bits (105), Expect = 5e-49
Identities = 128/139 (92%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 347
Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTC-AGACAACTTCA 530
|||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |
Sbjct 348 ACTGTTGCACAAATGGAACTTGAAAATACCAGGGTGACACGACTTTTCCAGACATCTCCC 407
Query 531 TCCTCAGCATCCTAAATGT 549
|| || ||||| |||||||
Sbjct 408 TC-TCGGCATCGTAAATGT 425
Score = 169 bits (91), Expect = 3e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 246 TATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCTTAACGATGA 305
||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 155 TATAACTGTAGTGGAGTATCTTATCAGTGAAGGAGTGGATATTAATGCTCTTAACGATGA 214
Query 306 GAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAG 351
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 215 GAACAATGCTCCTCTACATTGGGCATGTTTGAATGGCCATGTCGAG 260
> Ahg905266 jgi|Araly1|905266|Al_scaffold_0003_2394
Length=444
Score = 195 bits (105), Expect = 5e-49
Identities = 129/140 (92%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 366
Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTA-TGACATGACTTTTC-AGACAACTTC 529
|||||||| ||||||||||||||||||||||| | ||||| |||||||| ||||| || |
Sbjct 367 ACTGTTGCACAAATGGAACTTGAAAATACCAG-AGTGACACGACTTTTCCAGACATCTCC 425
Query 530 ATCCTCAGCATCCTAAATGT 549
|| || ||||| |||||||
Sbjct 426 CTC-TCGGCATCGTAAATGT 444
Score = 169 bits (91), Expect = 3e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 246 TATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCTTAACGATGA 305
||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 174 TATAACTGTAGTGGAGTATCTTATCAGTGAAGGAGTGGATATTAATGCTCTTAACGATGA 233
Query 306 GAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAG 351
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 234 GAACAATGCTCCTCTACATTGGGCATGTTTGAATGGCCATGTCGAG 279
> Ahg896781 jgi|Araly1|896781|Al_scaffold_0005_747
Length=189
Score = 189 bits (102), Expect = 2e-47
Identities = 128/140 (91%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 78
Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTA-TGACATGACTTTTC-AGACAACTTC 529
|||||||| ||||||||||||||||||||||| | ||||| |||||||| | ||| || |
Sbjct 79 ACTGTTGCACAAATGGAACTTGAAAATACCAG-AGTGACACGACTTTTCCAAACATCTCC 137
Query 530 ATCCTCAGCATCCTAAATGT 549
|| || ||||| |||||||
Sbjct 138 CTC-TCGGCATCGTAAATGT 156
> Ahg948288 jgi|Araly1|948288|scaffold_800175.1
Length=257
Score = 172 bits (93), Expect = 2e-42
Identities = 117/128 (91%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 156 TCTCAGAACCTTGGCCTCTGATGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAAC 215
||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1 TCTCAGAACATTGGCCTCTTATGGTGGCTCTCTTGACTCTCGTGATTCACAAGGCCGAAC 60
Query 216 AGCCCTGCATATGGCCGCAGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA 275
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 A--ACTGCATATGGCTGCGGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA 118
Query 276 AGGAGTGG 283
||| ||||
Sbjct 119 AGG-GTGG 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25427985639
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5