BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12320.1 Length=692 Score E Sequences producing significant alignments: (Bits) Value Ahg488076 jgi|Araly1|488076|fgenesh2_kg.6__1210__AT5G12320.1 870 0.0 Ahg929304 jgi|Araly1|929304|scaffold_301761.1 195 5e-49 Ahg905266 jgi|Araly1|905266|Al_scaffold_0003_2394 195 5e-49 Ahg896781 jgi|Araly1|896781|Al_scaffold_0005_747 189 2e-47 Ahg948288 jgi|Araly1|948288|scaffold_800175.1 172 2e-42 > Ahg488076 jgi|Araly1|488076|fgenesh2_kg.6__1210__AT5G12320.1 Length=571 Score = 870 bits (471), Expect = 0.0 Identities = 538/570 (94%), Gaps = 6/570 (1%) Strand=Plus/Plus Query 2 aaaaaaaaaaaGGAATCGGAC-AA-AA-ACCA-AGTGA-AACCAGAAACCCTCAGACTGA 56 ||||||||||||||||||||| || || |||| ||| | ||||||||||||||||| ||| Sbjct 1 AAAAAAAAAAAGGAATCGGACAAATAACACCAGAGT-AGAACCAGAAACCCTCAGATTGA 59 Query 57 AATTGGTATTGGCCGGTGGAGGATGGGAGCAGAGACAAACGGAGTTGCAGAGAAAGTCGA 116 ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| || Sbjct 60 AATTGGTATTGGCCGGTGGAGAATGGGAGCAGAAACAAACGTAGTTGCAGAGAAAGTTGA 119 Query 117 CGACTTGCTGGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA 176 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGACTTGCTTGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA 179 Query 177 TGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAACAGCCCTGCATATGGCCGCAGC 236 |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 180 TGGTGTCTCTCTTGACTCTCGTGATTCACAAGGCCGTACAGCCCTGCATATGGCCGCGGC 239 Query 237 GAATGGACATATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCT 296 ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| Sbjct 240 GAATGGACATATGACTATAGTGGAGTATCTTATCAGTCAAGGAGTGGATATTAATGCTCT 299 Query 297 TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAGGTGGT 356 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 300 TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCGTGTTGAGGTGGT 359 Query 357 AAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGAACTCC 416 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 GAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGGACTCC 419 Query 417 AATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT 476 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AATGGATGAAGCCATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT 479 Query 477 TGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTCAGACAACTTCATCCTCA 536 ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 480 TGCACAAATGGAACTTGAAAATACCAGTGTGACATGACTTTTCAGACATCTTCATCCTCA 539 Query 537 GCATCCTAAATGTTTTCTCTCTGTCTCTCT 566 |||||||||||||| ||| || ||| |||| Sbjct 540 GCATCCTAAATGTTCTCTTTCCGTCCCTCT 569 > Ahg929304 jgi|Araly1|929304|scaffold_301761.1 Length=478 Score = 195 bits (105), Expect = 5e-49 Identities = 128/139 (92%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 288 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 347 Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTC-AGACAACTTCA 530 |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || | Sbjct 348 ACTGTTGCACAAATGGAACTTGAAAATACCAGGGTGACACGACTTTTCCAGACATCTCCC 407 Query 531 TCCTCAGCATCCTAAATGT 549 || || ||||| ||||||| Sbjct 408 TC-TCGGCATCGTAAATGT 425 Score = 169 bits (91), Expect = 3e-41 Identities = 101/106 (95%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 246 TATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCTTAACGATGA 305 ||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 155 TATAACTGTAGTGGAGTATCTTATCAGTGAAGGAGTGGATATTAATGCTCTTAACGATGA 214 Query 306 GAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAG 351 ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 215 GAACAATGCTCCTCTACATTGGGCATGTTTGAATGGCCATGTCGAG 260 > Ahg905266 jgi|Araly1|905266|Al_scaffold_0003_2394 Length=444 Score = 195 bits (105), Expect = 5e-49 Identities = 129/140 (92%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 366 Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTA-TGACATGACTTTTC-AGACAACTTC 529 |||||||| ||||||||||||||||||||||| | ||||| |||||||| ||||| || | Sbjct 367 ACTGTTGCACAAATGGAACTTGAAAATACCAG-AGTGACACGACTTTTCCAGACATCTCC 425 Query 530 ATCCTCAGCATCCTAAATGT 549 || || ||||| ||||||| Sbjct 426 CTC-TCGGCATCGTAAATGT 444 Score = 169 bits (91), Expect = 3e-41 Identities = 101/106 (95%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 246 TATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCTTAACGATGA 305 ||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 174 TATAACTGTAGTGGAGTATCTTATCAGTGAAGGAGTGGATATTAATGCTCTTAACGATGA 233 Query 306 GAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAG 351 ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 234 GAACAATGCTCCTCTACATTGGGCATGTTTGAATGGCCATGTCGAG 279 > Ahg896781 jgi|Araly1|896781|Al_scaffold_0005_747 Length=189 Score = 189 bits (102), Expect = 2e-47 Identities = 128/140 (91%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 78 Query 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTA-TGACATGACTTTTC-AGACAACTTC 529 |||||||| ||||||||||||||||||||||| | ||||| |||||||| | ||| || | Sbjct 79 ACTGTTGCACAAATGGAACTTGAAAATACCAG-AGTGACACGACTTTTCCAAACATCTCC 137 Query 530 ATCCTCAGCATCCTAAATGT 549 || || ||||| ||||||| Sbjct 138 CTC-TCGGCATCGTAAATGT 156 > Ahg948288 jgi|Araly1|948288|scaffold_800175.1 Length=257 Score = 172 bits (93), Expect = 2e-42 Identities = 117/128 (91%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 156 TCTCAGAACCTTGGCCTCTGATGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAAC 215 ||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||| Sbjct 1 TCTCAGAACATTGGCCTCTTATGGTGGCTCTCTTGACTCTCGTGATTCACAAGGCCGAAC 60 Query 216 AGCCCTGCATATGGCCGCAGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA 275 | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 A--ACTGCATATGGCTGCGGCGAATGGACATATGACTATAGTGGAGTATCTTATCAGTGA 118 Query 276 AGGAGTGG 283 ||| |||| Sbjct 119 AGG-GTGG 125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25427985639 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5