BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12330.4
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488079 jgi|Araly1|488079|fgenesh2_kg.6__1213__AT5G12330.3 1402 0.0
> Ahg488079 jgi|Araly1|488079|fgenesh2_kg.6__1213__AT5G12330.3
Length=1369
Score = 1402 bits (759), Expect = 0.0
Identities = 842/882 (95%), Gaps = 6/882 (1%)
Strand=Plus/Plus
Query 448 CTGTGGCTACAACGAGGAGGCATAATCTACCGACGTCGGATTCCGGTGCGTTCACCGACT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTGTGGCTACAACGAGGAGGCATAATCTACCGACGTCGGATTCCGGTGCGTTCACCGACT 365
Query 508 GGGCGGCCACGACGACGACACCTTCCCGTGCCACCGAGGATCTCTCTCTTGGTTTCAATG 567
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 366 GGGCGGCGACGACGACGACACCTTCCCGTGCCACCGAGGATCTATCTCTTGGTTTCAATG 425
Query 568 CTGGTTCCTCCGTCATCCACGGTGGTTTAGGCTCAGCTTCCGTCGCCGCCGGCGTTCCAT 627
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 426 CTGGTCCCTCCGTCATCCACGGTGGTATAGGCTCAGCTTCCGTCGCCGCCGGCGTTCCAT 485
Query 628 CATGGCCTCCGGGATCTTCTGTCCGTTACGGCCTACCTTCTTCGGCGGCGGCGACGGAGA 687
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 486 CATGGCATCCTGGATCTTCTGTCCGTTACGGCCTACCTTCGTCGGCGGCGGCGACGGAGA 545
Query 688 TGGGCATGGTTGGTCTAAGAGATGTATTCCTTGTTGCTCCGGCTTATCACCACCAGAACG 747
|||||||||| ||||| |||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 546 TGGGCATGGTGGGTCTGCGAGACGTCTTCGTTGTTGCTCCGGCTTATCATCACCAGAACG 605
Query 748 CCGGAGTGATATCTGGATCCGATCATATGAACAGTAATGCAGCTGCGGCGGCGGCGCTCG 807
| ||||| ||||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 606 CTGGAGTTATATCTGGATCGGAACATATGAACAGTAATGCAGCTGCGGCGGCG-C--TCG 662
Query 808 GTGTCGGAGTGATTCCTCTACTCACGGCGGGTACACCGCAGCAAAACGTGGAAGACTCCG 867
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 663 GTGTCGGAGTGATTCCTCTACTCACGGCGGGTCCACCGCAGCAAAACGTGGAAGACTCCG 722
Query 868 ACATTAACTTCCTCGGAAACAACCGGAGATGGCAGAATAACAACAACAACCACGAAACGC 927
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 723 ACATTAACTTCCTCGGAAACAACCGGAGATGGCAGAACAACAACAACACCCACGAAACGC 782
Query 928 AGTATCTTCACTTCAAGAGTACTAACCAGACAACGGTCGGAACGAGCTCGAACAACTCGG 987
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 783 AGTATCTTCACTTCAAGAGTACTAACCAGACAACGGTCGGAACGAGTTCGAACAACTCGG 842
Query 988 GGTCTGGCTCAGGCGCATCAGGAACCGCCACGTGTCAAGACTGTGGAAATCAGGCGAAGA 1047
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGTCTGGCTCAGGCGTATCGGGAACCGCCACGTGTCAAGACTGTGGAAATCAGGCGAAGA 902
Query 1048 AAGAGTGTAAGCAGAGGCGGTGTAGGACTTGCTGCAAGAGCCGTGGCTTTGATTGTTCTA 1107
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 903 AGGAGTGTAAGCAGAGGCGGTGCAGGACGTGCTGCAAGAGCCGTGGCTTTGATTGTTCTA 962
Query 1108 CTCACGTGAAGAGCACGTGGGTCTCTGCTGCTCGGCGGAGAGAGAGGCAGGTCATGCCTA 1167
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 963 CTCACGTGAAGAGCACGTGGGTCTCTGCCGCTCGGCGGAGAGAGAGGCAGGTCATGCCTA 1022
Query 1168 CCGGCGCTAATCCAACGGCTGGCTCGTCTCTTTCGACCTCCTCCGGGACGAAGAAGCCGA 1227
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1023 CCGGCGCCAATCCAACGGCTGGCTCGTCTCTGTCGACCTCCTCCGGGACGAAGAAGCCGA 1082
Query 1228 GGATCGTAGGGTCTcaacaacaacaacaacaacaaGCCACTTCTCATACTTCAACTTCTA 1287
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 GGATCGCAGGGTCTCAACAACAACAACAACAA---GCCACTTCTCATACTTCAACTTCTA 1139
Query 1288 ACACACCACCTCAAAGTTTCGAGACCAGCTCCAGCCGACAAG 1329
|||| || |||||||||||||||||||| |||||||||||||
Sbjct 1140 ACACGCCTCCTCAAAGTTTCGAGACCAGTTCCAGCCGACAAG 1181
Score = 279 bits (151), Expect = 4e-74
Identities = 217/245 (89%), Gaps = 19/245 (8%)
Strand=Plus/Plus
Query 214 GAAAGTAGGAAACGGGTCAGATTGTTAGATAGAGAGAGGAAGCGAAGAAAAAGAGTCGCA 273
||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 2 GAAAGTAGGAAACGGGTCAGATTGTTAGAGAGAGAGAGGAAGCGAA-AAAA-GAGTCGCA 59
Query 274 GTGTTCTTTTTCCACTGCGTGTG-AG---CA----GAGATAGTGACAGAAGATTTCGAAA 325
||||||||||||| ||||||| | || || ||||||||||||| |||||||||||
Sbjct 60 GTGTTCTTTTTCCTCTGCGTGAGCAGAGACAAACAGAGATAGTGACAGTAGATTTCGAAA 119
Query 326 AAATCTAttttggatttgtttttgtttttggttttATAGCAA---TT---AGGATCCATC 379
|| |||||||||||||||||||||||||||||||||| | || || ||||||||||
Sbjct 120 AA-TCTATTTTGGATTTGTTTTTGTTTTTGGTTTTATCGGAAAAATTTGTAGGATCCATC 178
Query 380 TTCATCTTTCTCTATCAAAGCTCAGATTTGTGTAGATTTATGGGTTATGTACATTGGAGC 439
||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct 179 TTCATCTTTCTCTATCA--GCTCAGATTTGTATAGATTTATGGGTTATGTGCATTGGAGC 236
Query 440 TTTGT 444
| |||
Sbjct 237 TGTGT 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73323721625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5