BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12340.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940723 jgi|Araly1|940723|scaffold_601267.1 1070 0.0
> Ahg940723 jgi|Araly1|940723|scaffold_601267.1
Length=703
Score = 1070 bits (579), Expect = 0.0
Identities = 639/667 (96%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGAAGATCTCTAATCAATTCTTGTTTTCCGATAATCCGTAGACGCCAAGGAATAGTC 80
Query 61 ACGCT-TGTTTTCTTTGAGCATGTATCAACAAAAACCCTATGTGGCTTCAAGAAACATGT 119
||||| | ||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 81 ACGCTCT-TTTTCTTTGAGCATGGATCAACCAAAACCCTATGTGGATTCAAGAAACATGT 139
Query 120 TGCTGGAGAAATCATGTTTGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTT-TT 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 140 TGCTGGAGAAATCATGTTCGAGTTTCCTGATCAAATCGTGTGCCATGCAGATTCTTTCTT 199
Query 179 ACATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 200 -CATCGGTCGTCAGATTCCAGCTCTAGCCATGGACGACTATCTAATCCCAGGTCAAACCT 258
Query 239 ATTTCGTCTTACCGATCGAACGTTTT-CAATACAAAATCTTAACCACTTCGTGTCTCTCA 297
|||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 259 ATTTTGTCTTACCGATCGAACGTTTTGC-ATACAGAATCTTAACCACTTCGTGTCTCTCA 317
Query 298 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACTGCG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 318 ATCTTCAACTCTAATCTTGAAAACGTTCGGTCAAACACTCCACCGTTGAATTTCACGGCG 377
Query 358 CCGTCGAGTCCACCACCGTTTGAGTATTCTCAGGGACCAAACGGAAAGATTCTGATAAAA 417
||||| |||||||| |||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 378 CCGTCCAGTCCACCGCCGTTTGAGTATACTCAAGGACCAAACGGAGAGATTCTGATAAAA 437
Query 418 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GTTTCTCCGGAGTTTATCATTAGTCTTATATGTAAAAACAGAAACATCAGAGAAGAAGAA 497
Query 478 GCCACAAGTTGTGGTGAAAACAGTGCGATTTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 537
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 498 GCCACAAGTTGTGGTGAAAACAGTACGATCTGTAATTCTCCCGAGTTAAAGAAGCAGTAT 557
Query 538 GATCAGCTTGTTGGAACGA-GAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 596
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GATCAGCTTGTCGGAAC-ACGAGAGCACATGTGGTCACCGAATTTGCAGACGATCTCCGA 616
Query 597 GCATAAGATTAGGGTTTCTCCATTAAGGTTCTTCGGTCTAAATCGGAAGCAAGATGAAGT 656
||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||
Sbjct 617 GCATAAGATTAGGGTTTCTCCATTAAGATTCTTCGGTCTTAATCGGAGGCAAGAAGAAGT 676
Query 657 GAATTGA 663
|||||||
Sbjct 677 GAATTGA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5