BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12360.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488082 jgi|Araly1|488082|fgenesh2_kg.6__1216__AT5G12360.1 1230 0.0
> Ahg488082 jgi|Araly1|488082|fgenesh2_kg.6__1216__AT5G12360.1
Length=961
Score = 1230 bits (666), Expect = 0.0
Identities = 780/834 (94%), Gaps = 12/834 (1%)
Strand=Plus/Plus
Query 219 TTGTTTAGCTGTTGATTTGGAGTTTCTCTATCCGCTCATCGGCATCT-TTGAGCATGGCC 277
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 132 TTGTTTAGCTGTTGATTTGGAGTTCCTCTATCCGCTCATCGGCATCTGGTGAGCATGGCC 191
Query 278 AACACAATT-CTTCGCGGGCAGATGATTTTTCAGGACGAGAATGCATTGGCGGCCCTTGG 336
||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 192 AACACAATTGC-ACGCGGGCAGATGATTTTCCAGGACGAGAATGCATTGGCGGCCCATGG 250
Query 337 AAAAAAGGCGGTTGCTGCTGGAAAAGGTAAGAGTTCACTCGCAGCTCCAAAGAAAAATGG 396
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 251 AAAAAAGGCGGTTGCTGCTGGAAAAGGTAAGAGTTCGCTCGCAGCTCCAAAGAAAAACGG 310
Query 397 GGCGGGTTTCGGAAGCCGCAAGGCTCTCCATGACATTACAAACAAGTCAAAGTTGCAACC 456
| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 311 GACGGGTTTCGGAAACCGCAAGGCTCTGCATGATATTACAAACAAGTCAAAGTTGCAACC 370
Query 457 TCAAGCTTCATCCACGACGAGGAAGGATGTTGAGGGAGTGGATTTTGACATAGCAAAGGA 516
||||||||| |||| ||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 371 TCAAGCTTCTTCCAAGACGAAGAAGAATGTTGAGGGAGTGGACTTTGACATAGCAAAGGA 430
Query 517 AGGTTTCTTGCATGATCACAGCAAATGCATTGAAGAACAACAACAAGACCAGTGGGATAG 576
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 431 AGGTTTCTTGCATGATCACAGAAAATGCATTGAAGAACAACAACAAAATCAGTGGGATAG 490
Query 577 CTACTTCTCTGAACACATCATCCTGCATGGACATGAGACAAACATCAAAGAAGGGGTTCC 636
|||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 491 CTACTTCTCTGAACACATCATCCTTCATGGACATGATACCAACATCAACGAAGGGGTTCC 550
Query 637 TCAATACAATAATATTCAAGAGATTGATGCTGA-GA-A--CA-GC-TGGGATGAACTCAA 690
| |||||||||||| | |||||||||||| ||| || | || | ||||||||||||||
Sbjct 551 TGAATACAATAATAGTAAAGAGATTGATGATGAGGACAGCCACACTTGGGATGAACTCAA 610
Query 691 AGAGATACCAATGGAGGAGTTTTCCGATCTGCTGGAATGCTCAACTCAATGGCGCTCACC 750
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 611 AGAGATACCAACGGAGGAGTTTTCCGATCTGCTGGAATGCTCAACTCAATGGCGTTCACC 670
Query 751 ACCAGACTCACTAAGCCATCACCATTCTTCGTTACCTTCATCGCCTTTGCCATGGCATTT 810
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ACCAGACTCGCCCATCCATCACCATTCTTCGTTACCTTCATCGCCTTTGCCATGGCATTT 730
Query 811 TGAAACTGTAGAATTCAAGCTCAAGGAGGATGAAGACACCACTTGAGGTCCAGTTTTACT 870
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 731 TGAAACCGTAGAATTCAAGCTCAAGGAAGATGAAGACACCACCTGAGGTCCAGTTTTACT 790
Query 871 TTAGTTGttttttttttGTTGGAACAATATCAGTAACTTCTTAGTTTCTAATGTGATGAT 930
|||||| || |||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 791 TTAGTT-TTGTTTTTTTGTTGGAATAATATCAGTACCTTCTTAGTTTCCAATGTGATGAT 849
Query 931 GTATCTACAAATCTGCTCGAAATCCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACAC 990
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 850 GTATCTACAAATCTGCTCGAAAACCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACAC 909
Query 991 TGTATGTTTTATAGGATTTACAGAATGATTTAACCACAAAGAATTTACAACTTT 1044
||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 910 TGTATGTTT-ATAGGATTTACAGAATGATT-AACCACAAAGAATTTACAACTTT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5