BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12380.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488086 jgi|Araly1|488086|fgenesh2_kg.6__1220__AT5G12380.1 1568 0.0
> Ahg488086 jgi|Araly1|488086|fgenesh2_kg.6__1220__AT5G12380.1
Length=948
Score = 1568 bits (849), Expect = 0.0
Identities = 912/943 (97%), Gaps = 2/943 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACCATTGTTTCTCCTCCACATTTCTCCCCTGTCGAAGACGCTGAAAACATCAAG 60
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCACCATTGTTTCTCCTTCGCATTTCTCCCCTGTCGAAGACGCTGAAAACATCAAG 60
Query 61 GCGGCTTGTCAAGGATGGGGAACCAATGAAAATGCCATCATCTCGATCTTAGGACACCGG 120
|| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 61 GCCGCTTGTCAAGGATGGGGAACCAATGAAAAGGCCATCATCTCGATCCTAGGACACCGG 120
Query 121 AATTTGTTCCAGAGGAAGCTCATAAGACAAGCTTACCAGGAGATTTACCATGAGGATCTC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AATTTGTTCCAGAGGAAGCTCATAAGACAAGCTTACCAGGAGATATACCATGAGGATCTC 180
Query 181 ATTCACCAGCTCAAATCTGAGCTCTCTGGCAATTTTGAGAGAGCTATTTGCTTGTGGGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCACCAGCTCAAATCTGAGCTCTCTGGCAATTTTGAGAGAGCTATTTGCTTGTGGGTC 240
Query 241 TTGGATCCTCCAGAGAGAGATGCTCTCTTGGCTAACTTGGCTCTTCAAAAGCCTATTCCT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TTGGATCCTCCAGAGAGAGATGCTCTCTTGGCTCACTTGGCTCTTCAAAAGCCTATTCCT 300
Query 301 GACTACAAGGTTCTTGTCGAAATTGCCTGCATGAGATCCCCTGAAGATATGTTAGCTGCT 360
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 301 GACTACAAGGTTCTTGTTGAAATTGCCTGCATGAGATCCCCTGAAGATCTATTAGCTGCT 360
Query 361 AGACGTGCTTACCGTTGCCTCTACAAGCATTCTCTTGAGGAAGACTTGGCCTCCCGTACT 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AGACGTGCTTACCGTTGCCTCTACAAGCGTTCTCTTGAGGAAGACTTGGCCTCCCGTACT 420
Query 421 ATTGGCGACATCAGGAGACTCTTGGTTGCAATGGTGTCTGCTTATAAATATGATGGAGAA 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGGCGACATTAGGAGACTCTTGGTTGCAATGGTGTCTGCTTATAAATATGATGGAGAA 480
Query 481 GAAATTGATGAGATGCTGGCGCAATCAGAGGCTGCGATTCTTCATGATGAAATCCTTGGT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAATTGATGAGATGCTGGCACAATCAGAGGCTGCGATTCTTCATGATGAAATCCTTGGT 540
Query 541 AAGGCTGTTGATCACGAAGAAACGATCAGGGTGTTAAGTACAAGGAGCAGCATGCAGCTT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AAGGCTGTTGATCACGAAGAAACGATCAGGGTTTTAAGTACAAGGAGCAGCATGCAGCTT 600
Query 601 AGCGCAATCTTCAACCGCTACAAGGATATATATGGCACATCGATCACTAAGGATCTCCTC 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 AGCGCAATCTTCAACCGCTACAAGGATATATATGGCAGATCGATCACTAAGGATCTCCTC 660
Query 661 AATCACCCTACAAATGAGTACCTGAGTGCACTACGTGCAGCCATCAGGTGCATCAAAAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCACCCTACAAATGAGTACCTGAGTGCACTACGTGCAGCCATCAGGTGCATCAAAAAC 720
Query 721 CCTACCCGGTATTATGCAAAGGTTTTGCGCAATTCAATCAACACGGTGGGGACTGATGAA 780
|||| ||||||| | |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 721 CCTATCCGGTATCACGCAAAGGTATTGCGCAATTCAATCAACACTGTGGGGACTGATGAA 780
Query 781 GATGCTCTGAACCGTGTGATTGTCACACGAGCAGAAAAGGACCTGACGAATATAACTGGG 840
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 781 GATGCTCTGAACCGTGTGATTGTCACACGAGCAGAAAAGGACCTGAAGAATATAACTGAG 840
Query 841 CTGTA-CTTTAAGAGGAACAATGTGAGTCTCGATCAAGCTATAGCAAAAGAGACATCAGG 899
|| || | ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 841 CTATATCAC-AAGAGGAACAATGTGAGTCTCGATCAAGCCATAGCAAAAGAGACATCCGG 899
Query 900 GGACTACAAGGCCTTTCTTCTAGCTTTGCTAGGACATGGAAAA 942
|||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 900 GGACTACAAGGCTTTTCTTCTAGCCTTGCTAGGACATGGAAAA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5