BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12390.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350428 jgi|Araly1|350428|fgenesh1_pg.C_scaffold_6001021 832 0.0
Ahg488086 jgi|Araly1|488086|fgenesh2_kg.6__1220__AT5G12380.1 303 1e-81
> Ahg350428 jgi|Araly1|350428|fgenesh1_pg.C_scaffold_6001021
Length=504
Score = 832 bits (450), Expect = 0.0
Identities = 488/506 (96%), Gaps = 4/506 (1%)
Strand=Plus/Plus
Query 90 ATGGACGCGGCGATAGGGAAGGTTTTCGATTCCGTCTCAGACTTCTTCTCCGGCGCTGCT 149
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGACGCGGCGATAGGAAAGGTTTTCGATTCCGTCTCAGACTTCTTCTCCGGTGCTGCT 60
Query 150 TCTGCTTCCGCCGATGAGTTTCCCTTGTGCGATTCCGACATCATCTCCGGATGTGAGAAA 209
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGCTTCCGCCGATGAGTTCCCCTTGTGCGATTCCGACATCATCTCCGGATGTGAGAAA 120
Query 210 GAACTTGCAGAGGCTCAAGACGAAGGACGTAAGAAGGAATGCATTATGCGTCTTTCATGG 269
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GAACTTGCAGAGGCTCAAGACGAAGGACGTAAGAAGGAATGCATCATGCGTCTTTCATGG 180
Query 270 GCTCTTGTTCATTCAAAGATGCCTTCG-GATATTCAGCGTGGGATTGCAATGCTTGAAGC 328
|||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 181 GCTCTTGTTCATTCAAAGATGCCTG-GTGATATTCAGCGTGGAATTGCAATGCTTGAAGC 239
Query 329 TTTGGTGGTTAATGATACAAGTGCAATGAAACTTAGGGAGAAGCTATATCTCCTTGCTCT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGGTGGTTAATGATACAAGTGCAATGAAACTTAGGGAGAAGCTATATCTCCTTGCTCT 299
Query 389 TGGTTACTATCGAAGCGGTGACTTTTCAAGAAGCCGGGATTGTATAGAACGGTGTTTGGA 448
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGGTACTATCGAAGCGGTGACTTTTCAAGAAGCCGGGATTGTATAGAACGGTGTTTGGA 359
Query 449 GGTTGAACCGGAGTCCGGACAGGCTCAGGCACTCAAAAAGGCTATAGAGGACCGTATTGT 508
||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGTTGAACCAGAGTGGGGGCAGGCTCAGACACTCAAAAAGGCTATAGAGGACCGTATTGT 419
Query 509 GAAAGATGGTGTGATTGGCGTTGGAATTGCTGTTACTGCTGTAGGGGTTGTTGCTGGTAT 568
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 420 GAAAGATGGTGTGATTGGCGTTGGAATTGCTGTCACTGCTGTAGGGCTTGTTGCTGGTAT 479
Query 569 TGCTGCAGCCAT-ATTACGCAGCTAA 593
|||||||||||| || ||||||||||
Sbjct 480 TGCTGCAGCCATTAT-ACGCAGCTAA 504
> Ahg488086 jgi|Araly1|488086|fgenesh2_kg.6__1220__AT5G12380.1
Length=948
Score = 303 bits (164), Expect = 1e-81
Identities = 191/204 (94%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 863 TTTTCCATGTCCTAGCAAAGCTAGAAGAAAGGCCTTGTAGTCCCCTGATGTCTCTTTTGC 922
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 942 TTTTCCATGTCCTAGCAAGGCTAGAAGAAAAGCCTTGTAGTCCCCGGATGTCTCTTTTGC 883
Query 923 TATAGCTTGATCGAGACTCACATTGTTCCTCTTAAAG-TACAGCCCAGTTATATTCGTCA 981
||| ||||||||||||||||||||||||||||| | || ||| ||||||||||| |||
Sbjct 882 TATGGCTTGATCGAGACTCACATTGTTCCTCTT-GTGATATAGCTCAGTTATATTCTTCA 824
Query 982 GGTCCTTTTCTGCTCGTGTGACAATCACACGGTTCAGAGCATCTTCATCAGTCCCCACCG 1041
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 823 GGTCCTTTTCTGCTCGTGTGACAATCACACGGTTCAGAGCATCTTCATCAGTCCCCACAG 764
Query 1042 TGTTGATTGAATTGCGCAAAACCT 1065
||||||||||||||||||| ||||
Sbjct 763 TGTTGATTGAATTGCGCAATACCT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5