BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12410.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488088 jgi|Araly1|488088|fgenesh2_kg.6__1222__AT5G12410.1 1310 0.0
> Ahg488088 jgi|Araly1|488088|fgenesh2_kg.6__1222__AT5G12410.1
Length=1257
Score = 1310 bits (709), Expect = 0.0
Identities = 814/863 (94%), Gaps = 14/863 (2%)
Strand=Plus/Plus
Query 429 AGTGAAGGAGTTAATGATCAAGTGAATGAGAAAGAAATAGCAAGTGAAGGGTCATGTGAA 488
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 AGTGAAGGCGGTAATGATCAAGTGAATGAGAAAGAAATAGCTAGTGAAGGGTCATGTGAA 429
Query 489 GTCAAACAATTGGCAGAAAATGAGACTGTAAAAGAGGAAGAAGATAAAGGGAATCAGAAG 548
|| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 GTAAAAAAATTGGAAGAAAATGAGACTGAAAAAGAGGAAGAAGATAAAGGGAATCAGAAG 489
Query 549 AATGGTGGAGATGAACCTCCTAGAAAGAAGACGTGTACGGAAGAAGCAAATCCTTTAGCA 608
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 490 AACGGTGGAGATGAACCTCCAAGAAAGAAGACATGTACGGAAGAAGCAAATCCTTTAGCA 549
Query 609 AAAGTAAACGAAAATGCAGAGAAGTCTATTGATAAGTTGATTGAAGCTGAACTAAAAGAA 668
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AAAGTAAATGAAAATGCGGAGAAGTCTATTGATAAGTTGATTGAAGCTGAACTAAAAGAA 609
Query 669 CTTGGAGACAAGAGTAAGAGACGGTTCATGAAGTTAGATCCGGGTTGCAACGGTCTGGTC 728
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CTTGGGGACAAGAGTAAGAGACGGTTCATGAAGTTAGATCCGGGTTGCAACGGTCTGGTC 669
Query 729 TTCATCCAAATGAAAAAGAGAGATGGTGACCCAAGTCCCAAAGAAATTGTACAGCATGCT 788
|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 670 TTCATCCAAATGAAAAGGAGAGATGGTGACCCAAGTCCCAAAGATATTGCACAGCATGCA 729
Query 789 ATGACT-TCTGCTGCTGCAACAAAAAAGCATATGTCAAGGTTCATCCTAAGACTTCTACC 847
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATGA-TATCTGCTGCTGCCACAAAAAAGCATATGTCAAGGTTCATCCTAAGACTTCTACC 788
Query 848 AATTGAAGTGTCGTGTTACCCTTCAGAGGAAGAAATTTCAAGAGCCATCAAGCCGCTTGT 907
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 AATTGAAGTATCGTGTTACCCTTCAGAGGAAGAAATTTCAAGAGCCATCAAGCCTCTTGT 848
Query 908 AGAACAGTACTTCCCCATTGAGACCGAAAATCCCCGGAAATTTGCTGTGTTGTATGGAGC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGAACAGTACTTCCCCATTGAGACCGAAAATCCCCGGAAATTTGCTGTGTTGTATGGAGC 908
Query 968 GCGTGCTAACACAGGGCTTGATAGGATGAAAATAATAAACACGATCGCCAAATCTATTCC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 ACGTGCTAACACAGGGCTTGATAGGATGAAAATAATAAACACGATCGCCAAATCTATTCC 968
Query 1028 TGCCCCTCACAAAGTTGATTTGAGCAATCCGGAGATGACGATCGTGGTGGAAATTATTAA 1087
|||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||
Sbjct 969 TGCCCCTCACAAAGTTGATTTGAGCAATCCAGAGATGTCGATCGTGGTGGAAGTTGTTAA 1028
Query 1088 GACAGTGTGCTTAATTGGAGTGGTAGAGAAGTACAAGGAGCTAGCAAAGTACAACCTCAG 1147
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1029 GACAGTTTGCTTAATTGGAGTGGTAGAGAAGTATAAGGAGCTAGCAAAGTACAACCTCAG 1088
Query 1148 GCAGCTCACGTCGACCAATTGACACA-TCT--TCTT-TT--ATCTTTAACTATGTTTCGT 1201
|||||||||||||||||||||||||| ||| |||| || ||||||| |||||||| ||
Sbjct 1089 GCAGCTCACGTCGACCAATTGACACAATCTCCTCTTCTTCTATCTTTACCTATGTTTTGT 1148
Query 1202 TTCTTAAGACTGAAGATGCTTTTGTGTTTAGTGTTACAGAGTTTCTGGCTTAACTTATTA 1261
|| ||||||||| ||||||| | ||||||| || | || || |||||| |||||||||
Sbjct 1149 TTGTTAAGACTGGAGATGCTCT-GTGTTTACTGG-A-AG--TT-CTGGCTCAACTTATTA 1202
Query 1262 AAATGGCTGAAGTTGCCCTTTAT 1284
|||||||||||||||||||||||
Sbjct 1203 AAATGGCTGAAGTTGCCCTTTAT 1225
Score = 675 bits (365), Expect = 0.0
Identities = 401/419 (96%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 18 tctttctctctctctcCGACGATGGCTTCCGGTGACCAGAGCAAGAAGAGAAAACAGCAT 77
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTCCGTCGATGGCTTCCGGTGACCAGAGCAAGAAGAGAAAACAGCAT 60
Query 78 TATCGCCCTCAAAACAGACCAGTGAAGAAGAAGGGATCTTACCCTTTGAAGCCAGGTGTT 137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TATCGCCCTCAAAACAGACCAGTGAAGAAGAAGGGATCTTACCCTTTGAAGCCAGGCGTT 120
Query 138 CAAGGTTTTTTCATCTCTTGCGATGGCGGACGCGAATTCCAAGCTGCTCAGGAAGCTATT 197
|||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 121 CAAGGTTTCTTCATCTCTTGCGATGGTGGACGCGAATACCAAGCTTCTCAGGAAGCTATT 180
Query 198 AACGTCATTGATTCCTTTTTCGAGGAGCTAATACAAGGGACTGACTCGAAAGTGAATCCT 257
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 181 AACGTCATTGATTCCTTTTTCGAGGAGCTAATACAGGGGACCGACTCGAAAGTTAATCCT 240
Query 258 GGTTTGTTTGGTAATCCAATAAACAAAAAAGTTACATTTTCGTATAGCGAGGATGAGGAT 317
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTGTTTGATAACCCAATAAACAAAAAAGTTACATTTTCGTATAGCGAGGATGAGGAT 300
Query 318 GAGGAGGAAGATGAGAGTAATAATGGCGAGGAAGAGGAAAACAAAGGAGATGGGGATAAG 377
|| |||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct 301 GATGAGGAAGATGAGAGTAATTATGGCGAGGAAGAGGAGAACAAAGGGGATGGAGATAAG 360
Query 378 GCAGTAGTGAGTGAAGGCGGTAATGATCTAGTGAATGAGAAAGAAATAGCTAGTGAAGG 436
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCAGTAGTGAGTGAAGGCGGTAATGATCAAGTGAATGAGAAAGAAATAGCTAGTGAAGG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5