BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12420.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1 2625 0.0
Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1 1461 0.0
Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025 739 0.0
> Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1
Length=1704
Score = 2625 bits (1421), Expect = 0.0
Identities = 1626/1721 (94%), Gaps = 29/1721 (2%)
Strand=Plus/Plus
Query 15 GGGAAAAGGAAAATGACTTATGGGGAGGAGGAGCCGGTTAGCCCGATGGCGCGTGTATTC 74
|||||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GGGAAAGGGAGAATGACTAACGGGGAGGAGGAGCCGCTTAGCCCGATGGCGCGTGTATTC 60
Query 75 CAATCGCCGGGCATAGACTTATGTGCCGTGACCATCATGGGTTTCAAAACAAAGATTAAT 134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CAATCGCCGGGCATAGACTTATGTGCCGTGACCATCATGGGTTTCAAAACCAAGATTAAT 120
Query 135 CCCGACGTTGTTCTTGATGCCTTGAAGCAAAATGTCTCCAAGCATCCTCGTTTCTCCAGC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGACGTTGTTCTTGATGCCTTGAAGCAAAATGTCTCCAAGCATCCTCGTTTCTCCAGC 180
Query 195 ATACTGTCTGATAATGGTGCAAAATGGATCGAGACCGAAGTTAATGTAGAAGATCATGTA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATACTGTCTGATAATGGTGCAAAATGGATCGAGACCGAAGTTAATGTAGAAGATCATGTA 240
Query 255 ATTGTACCATACATAGACGCGGAAGAGATAGGTGAAGGTGGACAAAGCTTCATCGATGAT 314
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGTACCATACATAGACCCAGAAGAGATAGGTGAAGGTGGACAAAGCTTCATCGATGAT 300
Query 315 TATATGTCACGTCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCAC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATATGTCACGTCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCAC 360
Query 375 ATCCTTAACGTCAAAACCTCAGAGGCTGAAGCAGTCGGTTTTATAAGATCTCACCATTCG 434
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 361 ATCCTTAACGTCAAAACCTCAGATGCTGAAGCAGTTAGTTTTATAAGATCTCACCATTCG 420
Query 435 TTGGGAGATGGAATGTCTTTGATTTCCCTCATGCTCGCATGTACCCATAAAACATCAGAC 494
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TTGGGAGATGGAATGTCCTTGATTTCTCTCATGCTCGCATGTACCCATAAAACATCAGAT 480
Query 495 CCAGACATGTTTTCAAATGCTATTCCATCC-ATGAAACGGAGAGCCACAATGTCGCACAG 553
|||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||
Sbjct 481 CCAGACATGTTTTCAAATGCTATTCC-TCCCATGAAACGGCGAGCCACGTTGTCGCACAG 539
Query 554 CCTTAAAACCAAAGGCTGGTTCTTGAGGTCGATATTCACCATTGGTTCTACAATGAGACT 613
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCTTAAAACCAAAGGCTGGTTCTTGAGATCGATATTCACCATTGGTTCTACAATGAGACT 599
Query 614 GCTTTGGAATACAACTATAGATATGTTGTTGCTTTTGGCGACGGTGTTGTTTTTGAAAGA 673
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 600 GCTTTGGAATACAACTATAGATATGTTGTTGCTTTTGGCGACTGTGTTGTTTTTGAAGGA 659
Query 674 TACAAAAACGCCACTAAAAG-CTGGGGCAGATGTCAGGAGCAATCCAAAGAGATTTTATC 732
|||||||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||
Sbjct 660 TACAAAAACGCCACTAAAAGGC-GGGGCGGATGTCAGAAACAATCCAAAGAGATTTTATC 718
Query 733 ATCGAATTATCTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCA 792
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACCGAATTATCTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCA 778
Query 793 ACGATGTTCTG-TTCGGAATTACACAAGCATCTCTTTCTCACTATTTGAACCGACAGTAT 851
|||||||||| || ||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct 779 ACGATGTTCTACTT-GGAATTACAAAAGCCTCTCTTTCTCACTATTTGAACCGACATTAT 837
Query 852 GGCACGAAGAAGGAGGAGGATGGAGCGTTGACATCGTATC-GAAACAATCTTCCTGATGG 910
| || ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 838 GACAAGAAGAAGGAGGAGGATGGAGCATTGACATCGTATCAGAA-CAATCTTCCTGATGG 896
Query 911 AATACGATTTCGTGTAGCTTGTACAGTAAATCTTAGGTCAGACATTGGCTTCAAGCCTTT 970
||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 897 AATACGATTTCGTGTTGCTTGTACAGTAAATCTAAGGTCAGACATCGGGTTCAAGCCTTT 956
Query 971 GGCAGATATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTCAGCTTTATTTT 1030
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGCAGATATGATGGTGAAGGATTCAAAATGCAGATGGGGAAACTACTTCAGCTTTATTTT 1016
Query 1031 CTTGCCGTTCACCATCGGTTTACAAACCGATCCATTGGTTTATTTAAAAATGTCAAAATC 1090
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTTGCCATTCACCATCGGTTTACAAACCGATCCATTGGTTTATTTAAAAATGTCAAAATC 1076
Query 1091 CATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGTATTTTATCATCAAAAT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGTATTTTATCATCAAAAT 1136
Query 1151 CGTCCTAAAAGTGTTTGGCGCCAAGGCGGCAGCAGAATTATTTGATCGACCGGTGAGGAA 1210
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1137 CGTCCTAAAAGTGTTTGGCGCGAAGGCAGCAGCAGAATTATTTGATCGACCGGTGAGGAA 1196
Query 1211 CACAACGACATGTGTTTCAAACGTCATTGGCCCCATGGAAGAAATCAGTTTCCGTGGCCA 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CACAACGACATGTGTTTCAAACGTCATTGGCCCCATGGAAGAAATCAGTTTCCGTGGCCA 1256
Query 1271 TCCTGTCTCTTACATCGCTCCAAGTTCTTACGGACACTCACATGCATTGTTGATACATTT 1330
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 TCCTGTCTCTTACATCGCTCCAAGTTCTTACGGACACTCACATGCAATGTTGATACATTT 1316
Query 1331 AATGAGTTACGCGGATAAAATGATAATTTCGTTGGCGTATGATCCTACCGTCATATCAGA 1390
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1317 GATGAGTTATGCGGATAAAATGATAATTTCGTTGGCGTATGATCCTACCGTCATACCGGA 1376
Query 1391 CCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAGCAATGAAAGCTTCTCTCTG 1450
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1377 CCCTCACAAGATTTGCGATGATATGGAAGAATCACTGAAAGCGATGAAAGCTTCTCTATG 1436
Query 1451 TGAAAGAGGTTTACTCTAAGACGCAT-GAGCCATATTAACTGTAATCCTTAAGACTGTGT 1509
|||||||| |||||||||| |||| | || ||||||| | || ||||| ||||
Sbjct 1437 CGAAAGAGGGTTACTCTAAGGCGCACCGGGC-ATATTAA-T-----CCATAAGAATGTGG 1489
Query 1510 ATATGTTTTTGTTTGGTAAAAAATGTTGTGTTTTAGCAG-TTTT-CAATGCTTTTGTAGT 1567
|||||| |||||||||| ||||||||| ||||| || || |||| |||||||||||||||
Sbjct 1490 ATATGTCTTTGTTTGGTCAAAAATGTT-TGTTT-AGAAGCTTTTTCAATGCTTTTGTAGT 1547
Query 1568 ATCTATAAATATTGGAGTCAGaaaaaaa-TGTAATAAGAGTCGGTCCACTGTGTTGGAAA 1626
|||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||
Sbjct 1548 ATCTATAAATATTGGAGTCAGAAAAAAAATGTAAG--G-GTCGGTCCAATGTGTTGGAAA 1604
Query 1627 T--TAGTAGGTA--CGTATTGTCAAATATTTTAGAATATTAAGAGATCTCATTTTTCGTA 1682
| |||||| || ||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 1605 TAATAGTAGTTAAACGTATTGTCAAATATTTTAGA-TATTTAGAGACCTCATTTTTCGTA 1663
Query 1683 GTCCTAATTAATAAGAAAGCGTCATTCAATGATGTGACTTG 1723
||||||||||||||||||||||| | |||||||||||||||
Sbjct 1664 GTCCTAATTAATAAGAAAGCGTCGTCCAATGATGTGACTTG 1704
> Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1
Length=1484
Score = 1461 bits (791), Expect = 0.0
Identities = 1251/1466 (85%), Gaps = 59/1466 (4%)
Strand=Plus/Plus
Query 39 GAGGAGGAGCCGGTTAGCCCGATGGCGCGTGTATTCCAATCGCCGGGCATAGACTTATGT 98
|||||||||||| | || |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 46 GAGGAGGAGCCGCTCAGTCCGATGGCGCGTGTGTTCCAATCACCGGGCATAGACTTATGT 105
Query 99 GCCGTGACCATCATGGGTTTCAAAACAAAGATTAATCCCGACGTTGTTCTTGATGCCTTG 158
||| | | || ||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 106 GCCATCATCAACATTGGTTTCAAAACAAAAATTAATCCCGACGTTGTTCTTGATGCTTTG 165
Query 159 AAGCAAAATGTCTCCAAGCATCCTCGTTTCTCCAGCATACTGTCTGATAATGGTGCAAAA 218
||||||||||||| |||||| || || | | |||||| ||||||| ||||
Sbjct 166 AAGCAAAATGTCTACAAGCA---TC----CT----C--A--GTCTGAAAATGGTGAAAAA 210
Query 219 TGGATCGAGACCGAAGTTAATGTAGAAGATCATGTAATTGTACCATACATAGA-CGCGGA 277
||||| |||||| |||| |||||||||||||||||||| |||||||||||||| | | ||
Sbjct 211 TGGATTGAGACCAAAGTCAATGTAGAAGATCATGTAATCGTACCATACATAGATC-CAGA 269
Query 278 AGAGATAGGTGAAGGTGGACAAAGCTTCATCGATGATTATATGTCACGTCTCACGA-TGA 336
||||| | |||||| ||||||||||||| ||||||||||||| ||||||||||| | |||
Sbjct 270 AGAGACATGTGAAGTTGGACAAAGCTTCGTCGATGATTATATCTCACGTCTCAC-ATTGA 328
Query 337 TTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCACATCCTTAACGTCAAAACCTCAG 396
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 329 TTCCTCTTGATAGATCAAGACCTTTGTGGGACATTCACATTCTTAATGTCAAAACCTCAG 388
Query 397 AGGCTGAAGCAGTCGGTTTTATAAGATCTCACCATTCGTTGGGAGATGGAATGTCTTTGA 456
| ||||||||||||||| | ||||||| | ||||| |||||| |||||||||||| || |
Sbjct 389 ATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATGCGTTGGCAGATGGAATGTCCTTCA 448
Query 457 TTTCCCTCATGCTCGCATGTACCCATAAAACATCAGACCCAGACATGTTTTCAAATGCTA 516
|||||||| |||||||||||||||||||||||||| | ||||||||||| | | |||||
Sbjct 449 TTTCCCTCGTGCTCGCATGTACCCATAAAACATCAAATCCAGACATGTTGCCTACTGCTA 508
Query 517 TTCCATCCATGAAACGGAG-AGCCACAATGTCGCACAGCCTT-AAAACCAAA-GGCTGGT 573
|||| ||| |||| ||| | || |||| |||| || |||||| |||| ||| ||| |||
Sbjct 509 TTCCTTCCGTGAAGCGGCGAAG-CACAGTGTCACATAGCCTTGAAAA--AAATGGCAGGT 565
Query 574 TCTTGAGGTCGATATTCACCATTGGTTCTACAATGAGACTGCTTTGGAATACAACT-ATA 632
|||| ||| | |||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 566 TCTTAAGGGCAATATTCACCATTGGTTCTACAATGAGACTGATTTGGAATAC-ATTGGTA 624
Query 633 GATATGTTGTTGCTTTTGGCGACGGTGTTGTTTTTGAAAGATACAAAAACGCCACTAAAA 692
|||||||| |||||||| ||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 625 GATATGTTCTTGCTTTTTGCGACTATGTTGTTTTTGAAGGATACAAATACGCCACTAAAA 684
Query 693 -GCTGGGGCAG-ATGTCAGGAGCAATCCAAAGAGATTTTATCATCGAATTATCTCTTTAG 750
|| || || | ||||||||||||||||||||||||| ||||| |||| ||||||| |||
Sbjct 685 GGC-GGTGC-GAATGTCAGGAGCAATCCAAAGAGATTCTATCACCGAAATATCTCTCTAG 742
Query 751 ATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTCTGTTCGGAA 810
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 743 ATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTCTACTCGGAA 802
Query 811 TTACACAAGCATCTCTTTCTCA-CTATTTGAACCGACAGTATGG-CACG--AAGAAG--- 863
|||||||||| | |||||| | ||||||||||||||| || | || | |||||
Sbjct 803 TTACACAAGCCGCACTTTCT-AGCTATTTGAACCGACAATACGAACAAGCCAAGAATAAT 861
Query 864 GAGGAGGATGGAGCGTTGACATCGTATC-GAAACAATCTTCCTGATGGAATACGATTTCG 922
|||||||||||||| ||||| || |||| ||| ||||||||| ||||| |||||||||||
Sbjct 862 GAGGAGGATGGAGCATTGACTTCATATCCGAA-CAATCTTCCGGATGGCATACGATTTCG 920
Query 923 TGTAGCTTGTACAGTAAATCTTA-GGTCAGACATTGGCTTCAAGCCTTTGGCAGATATGA 981
|| || |||||| ||||| |||| |||||||||| || ||||||||||||||||| ||||
Sbjct 921 TGCAGGTTGTACCGTAAA-CTTAAGGTCAGACATCGGGTTCAAGCCTTTGGCAGAAATGA 979
Query 982 TGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTCAGCTTTATT-TTCTTGCCGTTC 1040
||||||||||||||||||||||||||||||||||||| |||||| || || || |||||
Sbjct 980 TGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTTAGCTTTTTTATT-TTACCGTT- 1037
Query 1041 ACC-ATCGGTTTACAAACCGATCCATTGGTTTATTTAAAAATGTCAAAATCCATGATGGC 1099
| | || |||||| |||||||||||||||||||| |||||| || ||| | ||||||||
Sbjct 1038 ATCGATTGGTTTAGAAACCGATCCATTGGTTTATCTAAAAAAATCCAAAGCTATGATGGC 1097
Query 1100 TCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGTATTTTATCATCAAAATCGTCC-TAA 1158
||||||||||||||| ||||| || |||||| ||||||| | |||||||| ||| |||
Sbjct 1098 TCGAAAGAAGCACTCCTATCAAGCAGCTCTAACGTATTTTCTTATCAAAATA-TCCCTAA 1156
Query 1159 AAGTGTTTGGCGCCAAGGCGGCAGCAGAATTATTTGAT-CGAC-CGGTGAGGAACACAAC 1216
||||||| || || ||||| || || |||||| || | || | ||| ||||| |||
Sbjct 1157 AAGTGTTAGGAGCTAAGGCAACAACATCATTATTC-ATTCAACACT-TGATGAACATAAC 1214
Query 1217 GACATGTGTTTCAAACGTCATTGGCCCCATGGAAGAAATCAGTTTCCGTGGCCATCCTGT 1276
||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||
Sbjct 1215 AACATGTGTTTCAAACGTTATGGGCCCTATGGAAGAAATCAGTTTCCATGGCCATCCTGT 1274
Query 1277 CTCTTACATCGCTCCAAGTTCTTACGGACACTCACATGCATTGTTGATACATTTA-ATGA 1335
| ||||||| ||||||| |||| |||||||||||||||||||||||||||| | | |
Sbjct 1275 CGCTTACATTTCTCCAAGCGCTTATGGACACTCACATGCATTGTTGATACATT-ACACAA 1333
Query 1336 GTTACGCGGATAAAATGATAATTTCGTTGGCG-TATGATCCTACCGTCATATCAGACCCT 1394
|||| || || |||||| ||| || | || | ||||||||| || ||| | || |||
Sbjct 1334 GTTATGCTGAGGAAATGACAATCACGATAACGGT-TGATCCTACTGTAATACCGGATCCT 1392
Query 1395 CACAAGATTTGTGATGATATGGAAGAATCACTGAAAGCAATGAAAGCT-TCTCTCTGTGA 1453
|||||||||| ||||||||||||||||||||||||| ||||||||||| | ||| || ||
Sbjct 1393 CACAAGATTTTTGATGATATGGAAGAATCACTGAAAACAATGAAAGCTGT-TCTTTGGGA 1451
Query 1454 AAGAGGTTTACTCTAAGACGCATGAG 1479
||||||||||||||||| ||||||||
Sbjct 1452 AAGAGGTTTACTCTAAGGCGCATGAG 1477
> Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025
Length=957
Score = 739 bits (400), Expect = 0.0
Identities = 581/665 (87%), Gaps = 25/665 (4%)
Strand=Plus/Plus
Query 318 ATGTCACGTCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCACATC 377
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGCCTCACGATGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTCACATC 60
Query 378 CTTAACGTCAAAACCTCAGAGGCTGAAGCAGTCGGTTTTATAAGATCTCACCATTCGTTG 437
|||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 61 CTTAACGTCAAAACTTCAGATGCTGAAGCAGTCAGTTTTATAAGATCTCACCATTCATTG 120
Query 438 GGAGATGGAATGTCTTTGAT-TTCCCTCATG-CTCGCATGTACCCATAAAACATCAGACC 495
|||||||||||||| || || |||||| || |||| |||||| || ||||||||||| |
Sbjct 121 GGAGATGGAATGTCCTT-ATGTTCCCT-ATTACTCGGATGTACTCAAAAAACATCAGATC 178
Query 496 C-AGACATGTTTTCAAATGCTATTCCATCCATGAAACGG-AGAGCCACAATGTCGCACAG 553
| || || || ||| | |||||||||| || |||||||| | || | | ||| ||| ||
Sbjct 179 CGAG-CACGTCTTCTACTGCTATTCCACCCGTGAAACGGCA-AGGCGCGGTGTTGCATAG 236
Query 554 CCTTA-AAACCAAAGGCTGGTTCTTGAGGTCGATATTCACCATTGGTTCTACAATGAGAC 612
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 237 CCTTAGAAAG-AAAGGCTGGTTCTTAAGGTCGATATTCACCATTGGTTCTACAATGACAT 295
Query 613 TGCTTTGGAATACAACTATAGATATGTTGTTGCTTTTGGCGACGGTGTTGTTTTTGAAAG 672
||||||||||||||| | ||||| ||||| ||||||||||||| | |||||||||| |
Sbjct 296 TGCTTTGGAATACAATTGTAGATGTGTTGCTGCTTTTGGCGACTATACTGTTTTTGAAGG 355
Query 673 ATACAAAAACGCCACTAAAAGCTGGGGCAGA-TGTCAGGAGCAATCCAAAGAGATTTTAT 731
|||||||||| || ||||||| ||| || ||||| ||||||||||||||||||||||
Sbjct 356 ATACAAAAACACCTCTAAAAGGTGGCTT-GAATGTCAAGAGCAATCCAAAGAGATTTTAT 414
Query 732 CATCGAATTAT-CTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTAT 790
|| |||||| | | |||| ||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 415 CACCGAATTGTGC-CTTTGGATGATATTAAACTTATAAAGAACGCGATGAACATGACTAT 473
Query 791 CAACGATGTTCTGTTCGGAATTACACAAGCATCTCTTTCTCACTATTTGAACCGACAGTA 850
|||||||||| | || ||||| |||||||| ||||||||||| |||||||||||| ||||
Sbjct 474 CAACGATGTTATATTTGGAATCACACAAGCCTCTCTTTCTCAGTATTTGAACCGAAAGTA 533
Query 851 TGGCACGAAGAAGGAGGAGGATGGAGCG-T---TGACATCGTATC-GAAACAATCTTCCT 905
|| || ||||||||||||||||||| | | |||||||||||| ||| ||||||||||
Sbjct 534 TG--AC-AAGAAGGAGGAGGATGGAG-GATCACTGACATCGTATCAGAA-CAATCTTCCT 588
Query 906 GATGGAATACGATTTCGTGTAGCTTGTACAGTAAATCTTAGGTCAGACATTGGCTTCAAG 965
|||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 589 GATGGAATACGATTTCATGTAGCTTGTACAGTAAATCTAAGGTCAGACATCGGCTTCAAG 648
Query 966 CCTTT 970
| |||
Sbjct 649 C-TTT 652
Score = 261 bits (141), Expect = 1e-68
Identities = 156/163 (96%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1016 CTTC-AGCTTTATTTTCTTGCCGTTCACCATCGGTTTACAAACCGATCCATTGGTTTATT 1074
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 642 CTTCAAGCTTTATTTT-TTGCCGTTCACCATCGGTTTAGAAACCGATCCATTGGTTTATC 700
Query 1075 TAAAAATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGT 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 701 TAAAAATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGACTCTAGTAT 760
Query 1135 ATTTTATCATCAAAATCGTCCTAAAAGTGTTTGGCGCCAAGGC 1177
||||||||||||||||||| |||||||||||||||||||||||
Sbjct 761 ATTTTATCATCAAAATCGTTCTAAAAGTGTTTGGCGCCAAGGC 803
Score = 172 bits (93), Expect = 6e-42
Identities = 137/158 (87%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 1314 GCATTGTTGATACATTTAATGAGTTACGCGGATAAAATGATAATTTCGTTGGC-GTATGA 1372
|||||| || | ||||| || ||||| ||||| || |||||||| ||| |||| || |||
Sbjct 802 GCATTGCTGGTGCATTTCATAAGTTATGCGGAGAAGATGATAATCTCGATGGCGGT-TGA 860
Query 1373 TCCTACCGTCATATCAGACCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAGC 1432
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TCCTACTGTCATACCAGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAGC 920
Query 1433 AATGAAAGCT-TCTCTCTGTGAAAGAGGTTTACTCTAA 1469
|||||| || | ||||||||||||||| ||||| |||
Sbjct 921 GATGAAAACTAT-TCTCTGTGAAAGAGGGTTACTATAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5