BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12450.1
Length=192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488093 jgi|Araly1|488093|fgenesh2_kg.6__1227__AT5G12450.1 302 7e-82
Ahg488092 jgi|Araly1|488092|fgenesh2_kg.6__1226__AT5G12450.1 302 7e-82
Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1 217 3e-56
> Ahg488093 jgi|Araly1|488093|fgenesh2_kg.6__1227__AT5G12450.1
Length=192
Score = 302 bits (163), Expect = 7e-82
Identities = 179/187 (96%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 6 AGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
Query 66 AATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAA 125
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 66 AAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAACAGCAA 125
Query 126 GCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATT 185
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 126 GCTCTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAATGCAACATACAATT 185
Query 186 CATCTGA 192
|||||||
Sbjct 186 CATCTGA 192
> Ahg488092 jgi|Araly1|488092|fgenesh2_kg.6__1226__AT5G12450.1
Length=192
Score = 302 bits (163), Expect = 7e-82
Identities = 179/187 (96%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 6 AGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
Query 66 AATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAA 125
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 66 AAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAACAGCAA 125
Query 126 GCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATT 185
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 126 GCTCTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAATGCAACATACAATT 185
Query 186 CATCTGA 192
|||||||
Sbjct 186 CATCTGA 192
> Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1
Length=195
Score = 217 bits (117), Expect = 3e-56
Identities = 168/191 (88%), Gaps = 9/191 (5%)
Strand=Plus/Plus
Query 2 TGCAAGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCT 61
||| ||||||||| |||| |||||||||||||| ||||||| | ||||||||||||||||
Sbjct 2 TGCTAGAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTCT 61
Query 62 T-GGGAATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTG-TG-G-ACG-CAGACAA 116
| ||||| |||| |||||||||||||||||||||||||||||| || | || | |||||
Sbjct 62 TGGGGAA-GTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAAC-GACAA 119
Query 117 CAACAGTAAGCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAA-TGCA 175
||||||| || |||||||||||||||||||| ||||||||| |||||||||| || ||||
Sbjct 120 CAACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCA-AAGTGCA 178
Query 176 ACATCCAATTC 186
|||| || |||
Sbjct 179 ACATTCAGTTC 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6453816109
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5