BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12450.1 Length=192 Score E Sequences producing significant alignments: (Bits) Value Ahg488093 jgi|Araly1|488093|fgenesh2_kg.6__1227__AT5G12450.1 302 7e-82 Ahg488092 jgi|Araly1|488092|fgenesh2_kg.6__1226__AT5G12450.1 302 7e-82 Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1 217 3e-56 > Ahg488093 jgi|Araly1|488093|fgenesh2_kg.6__1227__AT5G12450.1 Length=192 Score = 302 bits (163), Expect = 7e-82 Identities = 179/187 (96%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6 AGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65 Query 66 AATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAA 125 || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 66 AAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAACAGCAA 125 Query 126 GCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATT 185 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 126 GCTCTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAATGCAACATACAATT 185 Query 186 CATCTGA 192 ||||||| Sbjct 186 CATCTGA 192 > Ahg488092 jgi|Araly1|488092|fgenesh2_kg.6__1226__AT5G12450.1 Length=192 Score = 302 bits (163), Expect = 7e-82 Identities = 179/187 (96%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6 AGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65 Query 66 AATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAA 125 || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 66 AAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAACAGCAA 125 Query 126 GCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATT 185 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 126 GCTCTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAATGCAACATACAATT 185 Query 186 CATCTGA 192 ||||||| Sbjct 186 CATCTGA 192 > Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1 Length=195 Score = 217 bits (117), Expect = 3e-56 Identities = 168/191 (88%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 2 TGCAAGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCT 61 ||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| Sbjct 2 TGCTAGAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTCT 61 Query 62 T-GGGAATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTG-TG-G-ACG-CAGACAA 116 | ||||| |||| |||||||||||||||||||||||||||||| || | || | ||||| Sbjct 62 TGGGGAA-GTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAAC-GACAA 119 Query 117 CAACAGTAAGCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAA-TGCA 175 ||||||| || |||||||||||||||||||| ||||||||| |||||||||| || |||| Sbjct 120 CAACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCA-AAGTGCA 178 Query 176 ACATCCAATTC 186 |||| || ||| Sbjct 179 ACATTCAGTTC 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6453816109 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5