BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12460.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488094 jgi|Araly1|488094|fgenesh2_kg.6__1228__AT5G12460.1 2002 0.0
Ahg893175 jgi|Araly1|893175|Al_scaffold_0006_1171 1332 0.0
> Ahg488094 jgi|Araly1|488094|fgenesh2_kg.6__1228__AT5G12460.1
Length=1317
Score = 2002 bits (1084), Expect = 0.0
Identities = 1249/1328 (94%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 60
Query 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120
|| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 120
Query 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
Query 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 181 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 240
Query 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 241 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 299
Query 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 359
Query 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 419
Query 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479
||||||||| |||||||| ||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 420 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 479
Query 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 539
Query 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
Query 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
Query 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 660 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 719
Query 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 779
Query 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839
||| || |||||||||| |||||||||||||||||||||||||||| |||| | || |
Sbjct 780 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 835
Query 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGGATATAACTGGTCAGT 899
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 836 --A--A-TCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGAATATAACTGGTCAGT 890
Query 900 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATACCCAAGAAGCCACCT 959
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 891 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATTCCCAAGAAACCACCT 950
Query 960 GAAACGCCCTCTCGAAACATTCCGACCATGGAAGGATGTTAGAATACCGGCGTATGGATT 1019
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 951 AAAACGCCCTCTCGAAACATTCCGACCATGGAAAAATGTTAAAATACCGGCGTATACATT 1010
Query 1020 TAACACTAGACGGGTGACGAATGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGATTC 1079
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 TAACACTAGACGGGTCACGAAGGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGAGTC 1070
Query 1080 AGTTGTGGAAGACAAGAACCAAAGCTTGGTAACTACCATCTACAAGATGAAAATGGAAAG 1139
|||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1071 GGTTGTGGAGGACAAGAACCAAAGCTTAGTAACTACCATGTACAAGATAAAAATAGAAAG 1130
Query 1140 GCGTTTGCCTCCTTGTTTGCTAAATGGCAACCATTCTTCTCGTAACATTACACAAGTCCG 1199
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 GAGATTGCCTCCTTGTTTGCTAAATGGCAGCCATTCTTCTCGTAACATTACACAAGTCCG 1190
Query 1200 AGTCATTGCTACTACTATGCACAAGATGGTTGAGGGAATCGAATGTTGCGATGTGCAAAA 1259
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1191 AGTCATTGCTACTACTATGCACAAGATGGGCGAAGGAATCGAATGTTGCGATGTGCAATA 1250
Query 1260 TGTTAACAGTACGGAGATTTTGGAAGTGAAGATAAGAGATTGTCAT-ATAGATGAAGCTC 1318
||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||| ||
Sbjct 1251 TGTTAACAGTACGGAGATTATGGAAGTGAAGATAAGAGCTTGTCATGA-AGATGAAGTTC 1309
Query 1319 TTGCTTAG 1326
||||||||
Sbjct 1310 TTGCTTAG 1317
> Ahg893175 jgi|Araly1|893175|Al_scaffold_0006_1171
Length=873
Score = 1332 bits (721), Expect = 0.0
Identities = 825/874 (94%), Gaps = 11/874 (1%)
Strand=Plus/Plus
Query 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 4 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 63
Query 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120
|| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 64 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 123
Query 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 183
Query 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 184 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 243
Query 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 244 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 302
Query 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 303 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 362
Query 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 422
Query 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479
||||||||| |||||||| ||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 423 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 482
Query 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 542
Query 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 602
Query 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 662
Query 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 663 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 722
Query 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 723 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 782
Query 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839
||| || |||||||||| |||||||||||||||||||||||||||| |||| | || |
Sbjct 783 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 838
Query 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGT 873
| ||||||||||||||||||||||||||||
Sbjct 839 --A---GTCCCGTGTCTTGCAACAAACAATATGT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5