BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12460.1 Length=1326 Score E Sequences producing significant alignments: (Bits) Value Ahg488094 jgi|Araly1|488094|fgenesh2_kg.6__1228__AT5G12460.1 2002 0.0 Ahg893175 jgi|Araly1|893175|Al_scaffold_0006_1171 1332 0.0 > Ahg488094 jgi|Araly1|488094|fgenesh2_kg.6__1228__AT5G12460.1 Length=1317 Score = 2002 bits (1084), Expect = 0.0 Identities = 1249/1328 (94%), Gaps = 13/1328 (1%) Strand=Plus/Plus Query 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60 ||||||||||| || ||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 1 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 60 Query 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120 || || ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 61 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 120 Query 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180 Query 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | Sbjct 181 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 240 Query 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299 |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct 241 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 299 Query 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 359 Query 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 360 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 419 Query 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479 ||||||||| |||||||| ||| | ||| |||||||||||||||||||| |||||||||| Sbjct 420 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 479 Query 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 539 Query 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599 Query 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659 Query 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 660 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 719 Query 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779 |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 720 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 779 Query 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839 ||| || |||||||||| |||||||||||||||||||||||||||| |||| | || | Sbjct 780 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 835 Query 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGGATATAACTGGTCAGT 899 | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 836 --A--A-TCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGAATATAACTGGTCAGT 890 Query 900 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATACCCAAGAAGCCACCT 959 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 891 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATTCCCAAGAAACCACCT 950 Query 960 GAAACGCCCTCTCGAAACATTCCGACCATGGAAGGATGTTAGAATACCGGCGTATGGATT 1019 |||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| Sbjct 951 AAAACGCCCTCTCGAAACATTCCGACCATGGAAAAATGTTAAAATACCGGCGTATACATT 1010 Query 1020 TAACACTAGACGGGTGACGAATGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGATTC 1079 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1011 TAACACTAGACGGGTCACGAAGGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGAGTC 1070 Query 1080 AGTTGTGGAAGACAAGAACCAAAGCTTGGTAACTACCATCTACAAGATGAAAATGGAAAG 1139 |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 1071 GGTTGTGGAGGACAAGAACCAAAGCTTAGTAACTACCATGTACAAGATAAAAATAGAAAG 1130 Query 1140 GCGTTTGCCTCCTTGTTTGCTAAATGGCAACCATTCTTCTCGTAACATTACACAAGTCCG 1199 | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1131 GAGATTGCCTCCTTGTTTGCTAAATGGCAGCCATTCTTCTCGTAACATTACACAAGTCCG 1190 Query 1200 AGTCATTGCTACTACTATGCACAAGATGGTTGAGGGAATCGAATGTTGCGATGTGCAAAA 1259 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | Sbjct 1191 AGTCATTGCTACTACTATGCACAAGATGGGCGAAGGAATCGAATGTTGCGATGTGCAATA 1250 Query 1260 TGTTAACAGTACGGAGATTTTGGAAGTGAAGATAAGAGATTGTCAT-ATAGATGAAGCTC 1318 ||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||| || Sbjct 1251 TGTTAACAGTACGGAGATTATGGAAGTGAAGATAAGAGCTTGTCATGA-AGATGAAGTTC 1309 Query 1319 TTGCTTAG 1326 |||||||| Sbjct 1310 TTGCTTAG 1317 > Ahg893175 jgi|Araly1|893175|Al_scaffold_0006_1171 Length=873 Score = 1332 bits (721), Expect = 0.0 Identities = 825/874 (94%), Gaps = 11/874 (1%) Strand=Plus/Plus Query 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60 ||||||||||| || ||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 4 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 63 Query 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120 || || ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 64 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 123 Query 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 183 Query 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | Sbjct 184 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 243 Query 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299 |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct 244 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 302 Query 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 303 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 362 Query 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 363 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 422 Query 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479 ||||||||| |||||||| ||| | ||| |||||||||||||||||||| |||||||||| Sbjct 423 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 482 Query 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 483 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 542 Query 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 602 Query 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 662 Query 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 663 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 722 Query 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779 |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 723 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 782 Query 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839 ||| || |||||||||| |||||||||||||||||||||||||||| |||| | || | Sbjct 783 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 838 Query 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGT 873 | |||||||||||||||||||||||||||| Sbjct 839 --A---GTCCCGTGTCTTGCAACAAACAATATGT 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49597915017 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5