BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12840.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893182 jgi|Araly1|893182|Al_scaffold_0006_1178 1230 0.0
> Ahg893182 jgi|Araly1|893182|Al_scaffold_0006_1178
Length=813
Score = 1230 bits (666), Expect = 0.0
Identities = 772/822 (94%), Gaps = 12/822 (1%)
Strand=Plus/Plus
Query 150 ATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAG 209
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGCAATCGAAACCGGGAAGAGAAAACGAAGAGGAAGTC---AATCACCATGCTGTTCAG 57
Query 210 CAGCCGATGATGTAT---GCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCT 266
|| |||||||||||| ||||| ||||||||||||| ||||||||||||||| || |||
Sbjct 58 CAACCGATGATGTATCCAGCAGATCCCTGGTGGAAAATCAACTCCTTTGGTGTAGTTCCT 117
Query 267 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCC 326
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 118 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCGAATGGTTCC 177
Query 327 GAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGC 386
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 178 GAATCAAACGATGTTCATTCAGCATCTGAAGATGGTGCGTTGAATGGTGAAAATGACGGC 237
Query 387 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAA 446
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCATGGAATGGAA 297
Query 447 GGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCA 506
|| |||||||| || || ||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 298 GGGAATGACCCGGCACTTTCTATTCGTAATATGCATGATCAGCAACTTGTACAACCACCA 357
Query 507 GAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGG 566
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 GAGCTTGTTGGACATTATATCGCTTGTGTCCCAAATCCATATCAGGATCCATATTATGGC 417
Query 567 GGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCT 626
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 418 GGAATGATGGGAGCATATGGTCATCAGCCATTGGGTTTTCGACCATATCTTGGAATGCCT 477
Query 627 CGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAG 686
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 CGTGAAAGAACAGCTCTGCCACTTGACATGACACAAGAGCCCGTTTATGTGAATGCAAAA 537
Query 687 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAA 746
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 538 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGTTAGAAAGGAAA 597
Query 747 GTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGG 806
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GTCATCAGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCGATGAGAAGG 657
Query 807 GCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCA 866
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 658 GCACGAGCTAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTGGAAGCAGGAGAGGGTGCA 717
Query 867 GGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAG 926
||| || || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GGA---AG-GA--GAGAAAGGGGTTCAGCAACGAACTCATCAGGCTCTGAACAAGTTGAG 771
Query 927 ACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAA 968
|||||||||||||||||||||||||| || ||||||||||||
Sbjct 772 ACAGACTCTAATGAGACCCTGAATTCGTCAGGTGCACCATAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5