BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12850.1
Length=2773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488102 jgi|Araly1|488102|fgenesh2_kg.6__1236__AT5G12850.1 4209 0.0
> Ahg488102 jgi|Araly1|488102|fgenesh2_kg.6__1236__AT5G12850.1
Length=2770
Score = 4209 bits (2279), Expect = 0.0
Identities = 2631/2795 (94%), Gaps = 47/2795 (2%)
Strand=Plus/Plus
Query 1 GGTCACACCAGTTACCCTCTCATCCGTTTTCG-tttttttttt-CTCTCTTTCAAAAATC 58
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 GGTCACACCAGTTACCCTCTCATCCGTTTTCGTTTTTTTTTTTCCTCTCTTTCAAAAATC 60
Query 59 TCTCAGCTGAGGTTGATCGAtcttcttcttcttcttcCTCACTCTTTAGATT-TGTTCCT 117
|||||||||||| ||||||||||||||| || | || | | ||| | || | || |
Sbjct 61 TCTCAGCTGAGG-TGATCGATCTTCTTC-TC-AC-TCTTTA-GATTT-G-TTCTTTTTTT 113
Query 118 TTTGCATTTTACACTTTTGGATCTGAAAATGTGGTTCTCTGTTTCGCCCGTTACCGTTTA 177
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 114 TTTGCATTTTACACTTTTGGATCTGAAAATGTGGTTCTCTGTTTCGGCCATTACCGTTTA 173
Query 178 GATTCAGTTCTGt--ttttttCTTACCCGATCGCTTGATTCGGACTGTGA-TCTTT--GA 232
||||||||||||| || |||| || ||||||||||| || || | ||| | ||| ||
Sbjct 174 GATTCAGTTCTGTCCTTCTTTC-TA-CCGATCGCTTGTTTTGG--T-TGATTGTTTCAGA 228
Query 233 TCTTTTTTCTTCTCCAGTGCCGTGAAGGATGTGTGGTCTTGCTAAGAAGCTGGATATAGA 292
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 TCTTTTTTCATCTCCAGTTCCGTGAAGGATGTGTGGTCTTGCTAAGAAGCTGGATACAGA 288
Query 293 GGATACTTTGACATCACTGTCAGACCAAGAGAATGAATCTTTGGCCAAACCCATGAATGA 352
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 289 TAATACTTTGACATCACTTTCAGACCAAGAGAATGAATCTTTGGCCAAATCCATGAATGA 348
Query 353 TGCTGCTGAATGGGAACATTCGTTTTCTGCCTTGCTTGAGTTTGCTGCAGACAACGATGT 412
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 349 TGTTGCTGAGTGGGAACATTCGTTTTCTGCCTTGCTTGAGTTTGCTGCTGACAACGATGT 408
Query 413 GGAGGGGTTTAGGCGGCAACTCTCTGATGTGTCTTGTATCAACCAGATGGGTCTTTGGTA 472
||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 GGATGGGTTTAAGCGGCAACTCTCTGTTGTGTCTTGTATCAACCAGATGGGTCTTTGGTA 468
Query 473 CAGACGGCAGAGGTTTGTTAGAAGAATGGTTCTTGAGCAAAGAACCCCGCTGATGGTTGC 532
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CAGACGCCAGAGGTTTGTTAGAAGAATGGTTCTTGAGCAAAGAACCCCGCTGATGGTTGC 528
Query 533 TTCGTTATATGGGAGTTTAGATGTTGTGAAGTTTATTCTTTCTTTCCCGGAAGCGGAGTT 592
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 TTCGATATATGGGAGTTTAGATGTTGTGAAGTTTATTCTTTCTTTCCCTGAAGCGGAGTT 588
Query 593 GAATCTGTCTTGTGGTCCTGATAAAAGTACTGCTCTTCATTGCGCTGCTTCTGGTGCTTC 652
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GAATCTGTCTTGTGGTCCAGATAAAAGTACTGCTCTTCATTGCGCTGCTTCTGGTGCTTC 648
Query 653 TGTGAATTCCTTGGATGTTGTCAAGTTGCTTTTGAGTG-TAGGAGCAGATCCTAATATCC 711
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 649 TGTGAATTCCTTGGATGTTGTCAAGTTGCTTCTGAGTGCT-GGAGCAGATCCTAATATCC 707
Query 712 CTGATGCTCATGGAAATCGTCCTGTTGATGTTCTTGTTGTGTCTCCACACGCTCCTGGTT 771
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 708 CTGATGCTCATGGGAATCGTCCTGTTGATGTTCTTGTTGTTTCTCCGCACGCTCCTGGTT 767
Query 772 TGAGAACCATCCTTGAAGAGATCTTGAAGAAAGACGAGATTATATCTGAAGATCTGCATG 831
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 768 TTAGAACCATCCTTGAAGAGATCTTGAAGAAAGATGAGATTATATCTGAGGATCTGCATG 827
Query 832 CCTCGTCATCTAGCTTGGGATCAAGTTTCCGGTCTCTCTCATCATCCCCTGATAATGGTT 891
| || ||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 828 CGTCTTCATCTAGCTTGGGATCAAGTTTCCGGTCTCTCTCATCATCACCAGATAATGGCT 887
Query 892 CCTCGTTACTCTCCTTAGATTCAGTATCCTCTCCGACTAAGCCACACGGTACTGATGTAA 951
||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 888 CCTCGTTGCTCTCTTTAGATTCAGTATCCTCTCCGACTAAGCCAAACGGTACTGATGTGA 947
Query 952 CTTTCGCATCAGAGAAGAAAGAGTACCCAATTGATCCATCATTGCCTGATATCAAAAGCG 1011
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 948 CTTTCGCATCAGAGAAAAAAGAGTACCCAATTGATCCATCATTGCCCGACATCAAAAGTG 1007
Query 1012 GGATTTATTCAACCGATGAGTTTCGTATGTTCTCGTTCAAGATCCGCCCATGTTCTCGAG 1071
|||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1008 GGATTTATTCCACAGATGAGTTTCGTATGTTTTCGTTTAAGATCCGCCCGTGTTCTCGAG 1067
Query 1072 CATATTCCCATGACTGGACTGAATGTCCATTTGCACACCCAGGTGAGAATGCAAGGAGAA 1131
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1068 CATATTCCCATGACTGGACCGAATGTCCATTTGCACACCCAGGTGAGAATGCTAGGAGAA 1127
Query 1132 GAGACCCGAGGAAGTTTCACTATACGTGTGTTCCATGCCCGGATTTTAAGAAAGGATCCT 1191
||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct 1128 GAGACCCGAGGAAGTTTCACTATACCTGTGTTCCATGTCCGGATTTCAAGAAGGGATCCT 1187
Query 1192 GTAAGCAAGGTGATATGTGTGAATATGCTCATGGGGTTTTTGAATGCTGGCTACACCCTG 1251
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1188 GTAAGCAAGGCGATATGTGTGAATATGCTCATGGAGTGTTTGAATGCTGGCTACACCCTG 1247
Query 1252 CTCAGTACAGAACACGATTGTGCAAGGACGGAATGGGTTGCAACCGAAGGGTTTGCTTCT 1311
|||| ||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct 1248 CTCAATACAGAACACGATTGTGCAAGGATGGGATTGGCTGCAACCGAAGGGTTTGCTTCT 1307
Query 1312 TTGCTCACGCAAATGAGGAGTTGCGTCCCTTGTACCCTTCCACAGGATCTGGATTGCCAT 1371
|||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 1308 TTGCTCACGCAAATGAAGAGTTGCGTCCTTTGTATCCTTCCACTGGATCCGGATTGCCAT 1367
Query 1372 CTCCTCGGGCTTCGTCTGCTGTTTCCGCCTCTACTATGGACATGGCGTCAGTTTTGAACA 1431
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1368 CTCCTCGGGCTTCTTCTGCTGTTTCTGCCTCTACTATGGACATGGCGTCAGTTTTGAACA 1427
Query 1432 TGTTACCAGGCTCACCATCTGCTGCTCAACATTCGTTCACCCCACCAATATCTCCTTCTG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TGTTACCAGGCTCACCATCTGCTGCTCAACATTCGTTCACCCCACCAATATCTCCTTCTG 1487
Query 1492 GAAATGGTAGTATGCCCCATTCATCGATGGGTTGGCCTCAGCAGAACATACCGGCGTTGA 1551
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1488 GAAATGGTAGTATGCCCCATTCATCGATGGGTTGGCCTCAACAGAACATACCGGCGTTGA 1547
Query 1552 ATCTTCCTGGAAGCAATATCCAGTTGAGTCGTCTGAGATCTTCTCTTAACGCTAGAGATA 1611
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1548 ATCTTCCTGGAAGCAATATCCAGTTGAGTCGTCTGAGATCTTCTCTCAATGCTAGAGATA 1607
Query 1612 TTCCTTCTGAGCAGCTTAGCATGCTGCATGAGTTTGAAATGCAACGTCAGCTTGCTGGCG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TTCCTTCTGAGCAGCTTAGCATGCTGCATGAGTTTGAAATGCAACGTCAGCTTGCTGGCG 1667
Query 1672 ATATGCACAGTCCACGCTTTATGAATCATTCCGCTCGTCCTAAGACACTGAACCCTTCAA 1731
||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||
Sbjct 1668 ATATGCACAGTCCACGCTTTATGAATCATTCTGCTCGCCCCAAGACACTGACCCCTTCAA 1727
Query 1732 ATCTGGAGGAACTCTTCTCAGCTGAGGTTGCATCTCCTCGTTTCTCTGATCAACTTGCTG 1791
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 ATCTGGAGGAACTGTTCTCAGCTGAGGTTGCATCTCCTCGTTTCTCTGATCAACTTGCTG 1787
Query 1792 TTTCATCTGTTCTATCGCCTTCCCACAAGTCCGCGCTTCTTAATCAGCTGCAGAATAATA 1851
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1788 TCTCATCTGTTCTATCGCCTTCCCACAAGTCCGCGCTTCTTAATCAACTGCAGAATAATA 1847
Query 1852 AGCAGAGCATGCTTTCTCCTATCAAGACAAATCTAATGTCTTCTCCAAAGAATGTGGAGC 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 AGCAGAGCATGCTTTCTCCTATCAAGACAAATCTAATGTCTTCTCCAAAGAATGTGGAGC 1907
Query 1912 AACATTCTCTTCTGCAGCAAGCCTCGTCACCCCGAGGCGGAGAGCCTATTTCCCCAATGA 1971
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1908 AACATTCTCTTCTGCAGCAAGCCTCGTCACCTCGAGCCGGGGAGCCTATTTCCCCAATGA 1967
Query 1972 ATGCTCGAATGAAACAGCAGCTACATTCACGCAGCCTAAGCTCCCGTGATTTTGGATCTA 2031
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1968 ACGCTCGAATGAAACAGCAGCTACATTCACGTAGCCTCAGCTCCCGTGATTTTGGATCCA 2027
Query 2032 GTCTGCCCCGTGATTTAATGCCGACTGATTCTGGTTCGCCATTAAGTCCATGGTCAAGTT 2091
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2028 GTCTGCCCCGTGATTTAATGCCGACTGATTCTGGTTCGCCCCTAAGTCCATGGTCAAGTT 2087
Query 2092 GGGACCAGACCCATGGAAGCAAGGTGGATTGGTCAGTCCAATCAGATGAGTTAGGTCGGT 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 GGGACCAGACCCATGGAAGCAAGGTGGATTGGTCAGTCCAATCAGATGAGTTAGGTCGGT 2147
Query 2152 TGAGAAAATCTCATTCCTTGGCTAATAACCCAAACAGGGAAGCAGATGTTTCATGGGCTC 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 TGAGAAAATCTCATTCCTTGGCTAATAACCCAAACAGGGAAGCAGATGTTTCATGGGCTC 2207
Query 2212 AGCAGATGTTAAAAGACTCTTCATCACCTAGGAACGGAAACCGTGTTGTGAACATGAATG 2271
|||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||| |
Sbjct 2208 AGCAGATGTTAAAAGACTCTGCATCACCTAGGAACGGGAACCGAGTCGTGAACATGAACG 2267
Query 2272 GTGCAAGGCCATTGACTCAAGGTGGTTCGAGTGTGAATCCTCACAACAGTGACACTCGTG 2331
|||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||
Sbjct 2268 GTGCAAGGCCATTGACTCAAGGTGGTTCAAGTGTGAATCCTCGCCACAGTGAGACTCGTG 2327
Query 2332 AGAGCGACATTCTTGATGCGTGGCTTGAACAGCTGCACCTAGATCGCTGAGCCTCAGCTG 2391
||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||| |
Sbjct 2328 AGAGCGACATTCTCGATGCGTGGCTTGAGCAGCTGCAGCTAGATCGCTGAGACTCAGG-G 2386
Query 2392 CGAGAGAGAGGTTCACATTTCTGTGAAGCTGTGAAACTGATGATTCGTTTATTT-ATTAT 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2387 -GAGAGAGAGGTTCACATTTCTGTGAAGCTGTGAAACTGATGATTCGTTTATTTTATTAT 2445
Query 2451 TCAAGAAAGCAAACGGAAACAAAAGCAAACTCCGGGTAAGCT-TTTTTCGATTCTAATAA 2509
|||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 2446 TCAAGAAAGCAAACGGAA-CAAAT------TCCGGGTAAGCGCTTTTTCGATTCTAATAA 2498
Query 2510 CCCTAAAAGGCTCAGttttttcaggcttctttctgaaatttctttactttcttatttttA 2569
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2499 CCCTAAAAGGCTCAGTTTTTTCAGGCTTCTTTCTGAAATTTCTTTACTTCCTTATTTTTA 2558
Query 2570 TCACCTCATTAAATTAATTATTGTATCATCTCTGTTGTAACAATGGCCAAAGTG--C--- 2624
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 2559 TCACCTCATTAAATTAATTATTGTATC-TCT--GTTGTAACAATGGCCAAAGTGTTCCTC 2615
Query 2625 ---GCCTCTATTACTTCCCGGATTTCTGATTTACATTTTTTGTATCCTCTCAGTTTGTCA 2681
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2616 TTTGCCTCTATTACTTCCCGTATTTCTGATTTACATTTTTTGTATTCTCTCAGTTTGTCA 2675
Query 2682 ATTGTTTCTAATATCTCCTTCATATTTGTCAAAGAACACTGTATGAGAAATAATAA---C 2738
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 2676 ATTGTTTCTAATATCTCTTTCATATTTGTCAAAGAACATTGTATGAGAAATAATAATAAC 2735
Query 2739 ATATTGTTTCAGCTAATAAGATTCATTCATTTCCT 2773
|||||||||||||||||||||||||||||||||||
Sbjct 2736 ATATTGTTTCAGCTAATAAGATTCATTCATTTCCT 2770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104633903015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5