BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12860.1
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940745 jgi|Araly1|940745|scaffold_601289.1 2867 0.0
> Ahg940745 jgi|Araly1|940745|scaffold_601289.1
Length=1816
Score = 2867 bits (1552), Expect = 0.0
Identities = 1746/1836 (95%), Gaps = 27/1836 (1%)
Strand=Plus/Plus
Query 12 tcgccgacgacgctacaaccatggcgtctctcgctctctccggctcctgctctctcgctt 71
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGCCGACGACGCTACAACAATGGCGTCTCTCGCTCTCTCCGGCTCCTGCTCTCTCGCTT 60
Query 72 tccctctcaaatctcgatctctctctctccctcgtcctccttcttcctctctcaatttga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCTCTCAAATCTCGATCTCTCTCTCTCCCTCGTCCTCCTTCTTCCTCTCTCAATTTGA 120
Query 132 cgaaacctctccgatctctcgattctcGCTTCTCCTTACTCAAATCTCCACTTCCCG--T 189
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAACCTCTCCGATCTCTCGACTCTCGCTTCTCCTTACTCAAATCTCCACTTCCCGCCG 180
Query 190 C-TCT-TTACGCCGGAGATCATCAACTCTCGTTAAAGCCTCTTCCACCGTCGCTTCAGCT 247
| ||| ||| |||||||||||||||||||||||||||||||| ||| ||| | |||
Sbjct 181 CTTCTCTTA-ACCGGAGATCATCAACTCTCGTTAAAGCCTCTT---CCGCCGC-T--GCT 233
Query 248 TCCT-CTTCTCCAACTCCTCCTTTGGTTCCAGCTCCGGTTCCATGGCAAGGAGCTGCCAT 306
| || | ||| | || | || || | ||||||||| |||||||||||||||||||||||
Sbjct 234 T-CTCCGTCT-C--CT-C-CCGTT-GCTCCAGCTCCCGTTCCATGGCAAGGAGCTGCCAT 286
Query 307 TAAGCCTCTTCTCGCTTCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCAGTCCCCGA 366
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 287 TAAGCCTCTTATCGCATCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCTGTCCCCGA 346
Query 367 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGAT 406
Query 427 CATCACTCAGCCGCTTCCTCTCGGTGCTGTTGCTCTAATGGGATTAGGAGCTTCCGTTCT 486
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 407 CATCACTCAGCCGCTTCCTCTCGGCGCTGTTGCTCTATTGGGATTAGGAGCTTCCGTTCT 466
Query 487 CACCAAAACCCTAACGTTCGCCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 546
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CACCAAAACCCTAACGTTCACCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCT 526
Query 547 CATCGCTCTTGCCTTCTTCTTCGCTCGCGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 606
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 CATCGCTCTCGCCTTCTTCTTCGCTCGTGGTTTCATCAAAACCGGTCTCGGTAACCGTGT 586
Query 607 AGCTTACCAGTTCGTTAGACTCTTCGGTAGCTCCTCCCTTGGTCTCGGTTACAGTCTCGT 666
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 587 AGCTTACCAGTTCGTTAGACTCTTTGGTAGCTCCTCGCTTGGGCTTGGTTACAGTCTCGT 646
Query 667 CTTCAGTGAAGCTCTTTTAGCTCCGGCGATTCCTTCTGTCTCGGCTCGTGCCGGTGGAAT 726
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 647 CTTCAGTGAAGCACTCTTAGCTCCGGCGATTCCTTCAGTCTCGGCTCGTGCCGGTGGAAT 706
Query 727 CTTTCTCCCGTTGGTGAAATCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGGGATGGAAC 786
||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||
Sbjct 707 CTTTCTCCCGTTGGTTAAATCTCTCTGTGTCGCTTGTGGTAGCAACGTTGGGGATGGAAC 766
Query 787 AGAGCACCGTCTTGGCTCGTGGTTGATGCTTACTTGTTTCCAGACTTCTGTGATCTCTTC 846
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 767 TGAGCACCGTCTTGGCTCGTGGTTGATGCTCACTTGTTTCCAGACTTCTGTGATCTCTTC 826
Query 847 TTCTATGTTCTTGACGGCTATGGCTGCGAATCCTTTGAGTGCTAATTTGGCGTTTAACAC 906
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 827 TTCTATGTTCTTGACGGCTATGGCTGCCAATCCTTTGAGTGCTAATCTGGCGTTTAACAC 886
Query 907 GATTAAGCAGACGATTGGATGGACTGATTGGGCTAAAGCTGCGATTGTACCAGGACTTGT 966
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 887 GATCAAGCAGACGATTGGATGGACTGATTGGGCAAAAGCTGCGATTGTACCAGGACTTGT 946
Query 967 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTCATCTATCCTCCTACGGTGAAGAGCAG 1026
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 947 GTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTTATCTATCCTCCTACGGTGAAGAGCAG 1006
Query 1027 TCCTGATGCTCCTAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1086
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CCCTGATGCTCCCAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAA 1066
Query 1087 CGAATTGATTATGGCTGCCACTTTATTCCTCACGGTTGGTCTCTGGATCTTTGGAGCTAA 1146
||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1067 CGAGTTGATTATGGCCGCTACTTTGTTCCTCACGGTTGGTCTCTGGATTTTTGGAGCTAA 1126
Query 1147 GTTGGGTGTAGATGCTGTGACTGCAGCCATTCTTGGATTATCAGTCCTTCTTGTGACAGG 1206
|||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1127 GTTGAGTGTAGATGCTGTGACAGCAGCCATTCTTGGATTATCAGTCCTCCTTGTGACAGG 1186
Query 1207 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCGGTCGCATGGGACACACTCACCTGGTT 1266
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1187 TGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCAGTCGCATGGGACACACTCACCTGGTT 1246
Query 1267 CGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAG 1306
Query 1327 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCTTTTGGAAT 1386
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1307 CCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCATTTGGAAT 1366
Query 1387 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCTAGTGGAGCTGCCCACATTGG 1446
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1367 CCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCCAGTGGAGCTGCTCACATTGG 1426
Query 1447 TGCTATGTTCACTGCCTTTTTATCGGTTTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1506
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1427 AGCTATGTTCACTGCCTTTTTATCGGTCTCAACCGCTCTAGGCACTCCACCTTACTTTGC 1486
Query 1507 AGCCTTGGTTCTTGCGTTCCTT-TCCAACCTGATGGGAGGATTGACCCATTATGGTATCG 1565
||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1487 AGCCTTGGTTCTTGCATTC-TTATCCAACCTGATGGGAGGATTGACTCATTATGGTATCG 1545
Query 1566 GGTCTGCGCCTATCTTCTACGGAGCTAACTACGTGCCGCTGGCTAAATGGTGGGGCTATG 1625
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 1546 GGTCTGCGCCTATCTTCTACGGGGCTAACTATGTGCCGTTGGCTAAATGGTGGGGCTATG 1605
Query 1626 GATTCCTGATTTCAATAGTCAACATTCTCATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1606 GATTCCTGATTTCAATAGTCAACATTCTTATCTGGCTTGGTGTAGGTGGTGCCTGGTGGA 1665
Query 1686 AGTTCATTGGCTTGTGGTGAGGACCACCATACACCAATCTTCCCATTCTTTTCCTTACTT 1745
||||||||||||||||||||||||||| | |||||| | |||||||||||||||||| |
Sbjct 1666 AGTTCATTGGCTTGTGGTGAGGACCACAACACACCAGTATTCCCATTCTTTTCCTTA-T- 1723
Query 1746 ATATATATAATCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATTGAAA-TCAGG 1804
||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1724 ATATATA-A-TCTCTTAGAACGGCTTTGAGATTCAGATTTGAGAAGGATT-AAACTCAGG 1780
Query 1805 GTTATAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1840
||| ||||||||||||||||||||||||||||||||
Sbjct 1781 GTTTTAAGGATTGAGCAGAGTTTTTCTGCAATTTTT 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73133270400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5