BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12870.1
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940747 jgi|Araly1|940747|scaffold_601291.1 1399 0.0
> Ahg940747 jgi|Araly1|940747|scaffold_601291.1
Length=883
Score = 1399 bits (757), Expect = 0.0
Identities = 843/885 (95%), Gaps = 4/885 (0%)
Strand=Plus/Plus
Query 34 CAATTAACTCAACCAAAAATATGAGGAAGCCAGAGGTAGCCATTGCAGCTAGTACTCACC 93
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 CAATTAACTCAACTAAAAAAATGAGGAAACCAGAGGTAGCCATTGCAGCTAGTACTCATC 60
Query 94 AAGTAAAGAAGATGAAGAAGGGACTTTGGTCTCCTGAGGAAGACTCAAAGCTGATGCAAT 153
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 61 AAGTAAAGAAGATGAAGAAGGGTCTTTGGTCTCCGGAGGAAGACTCAAAGCTTATGCAAT 120
Query 154 ACATGTTAAGCAATGGACAAGGATGTTGGAGTGATGTTGCGAAAAACGCAGGACTTCAAA 213
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 ACATGTTAAGCAATGGACAAGGATGTTGGAGCGATGTTGCGAAAAACGCAGGTCTTCAAA 180
Query 214 GATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCTTCGTCCTGACCTCAAGCGTG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGTGGCAAAAGCTGCCGTCTTCGTTGGATCAACTATCTTCGTCCTGACCTCAAGCGTG 240
Query 274 GCGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACA 333
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGCTTTCTCTCCTCAAGAAGAGGATCTCATCATTCGCTTTCATTCCATCCTCGGCAACA 300
Query 334 GGTGGTCTCAGATTGCAGCACGATTGCCTGGTCGGACCGATAACGAGATCAAGAATTTCT 393
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 301 GGTGGTCTCAGATTGCAGCACGATTGCCTGGTCGGACCGACAACGAGATCAAGAATTTTT 360
Query 394 GGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCCGATACCTCCAA-CTTAATCAAC 452
||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||
Sbjct 361 GGAACTCAACAATAAAGAAAAGGCTAAAGAAGATGTCTGATACATCCAATCTCA-TCAAC 419
Query 453 AACTCATCCTCATCACCCAACACAGCAAGCGATTCCTCTTCTAATTCCGCATCTTCTTTG 512
|||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||
Sbjct 420 AACTCATCCTCATCACCCAACACAACAAGTGACACCTCTTCTAATTCCGCCTCTTCTTTG 479
Query 513 GATATTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGAACAAGGCTTCGTCAACCCT 572
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATCTTAAAGACATTATAGGAAGCTTCATGTCCTTACAAGAACAAGGCTTCGTCAACCCT 539
Query 573 TCCTTGACCCACATACAAACCAACAATCCATTTCCAACGGGAAACATGATCAGCCACCCG 632
|||||||||||||||| || |||||||||||||||| ||| |||||||| ||||||||||
Sbjct 540 TCCTTGACCCACATACCAAGCAACAATCCATTTCCAGCGGCAAACATGACCAGCCACCCG 599
Query 633 TGCAATGACGATTTTACCCCTTATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAA 692
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCAATGACGATTTCACACCTTATGTAGATGGTATCTATGGAGTAAACGCAGGGGTACAA 659
Query 693 GGGGAACTCTACTTCCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATA 752
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGGACCTCTATTTTCCACCTTTGGAATGTGAAGAAGGTGATTGGTACAATGCAAATATT 719
Query 753 AACAACCACTTAGACGAGTTGAACACTAATGGATCCGGAAACGCACCTGAGGGTATGAGA 812
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 720 AACAACCACTTAGACGAGTTGAACACTAATGGATCTGGAAACGCAACTGACAGTATGAGA 779
Query 813 CCAGTGGAAGAATTTTGGGACCTTGACCAGTTGATGAACACTGAGGTTCCTTCGTTTTAC 872
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCAGGGGAAGAATTTTGGGACCTTGACCAGTTGATGAACACTGAGGTTCCTTCGTTTTAC 839
Query 873 TTCAACTTCAAACAAAGCATATGAATATTTTTACGTCATCTTATT 917
|||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 840 TTCAACTTCAAACAAAGCATATGAAT-TTTT-ACATCATCTTATT 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41401487862
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5