BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12880.1 Length=444 Score E Sequences producing significant alignments: (Bits) Value Ahg488106 jgi|Araly1|488106|fgenesh2_kg.6__1240__AT5G12880.1 608 9e-174 > Ahg488106 jgi|Araly1|488106|fgenesh2_kg.6__1240__AT5G12880.1 Length=436 Score = 608 bits (329), Expect = 9e-174 Identities = 407/443 (92%), Gaps = 11/443 (2%) Strand=Plus/Plus Query 1 CATCAATCTCTCTTTTGCGATTCGAAGATGAGACGTTCATGGCCTACACGCCTCATCCTC 60 ||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1 CATCAATTTCTCTTGTGCGATTCGAAGATGAAACGTTTATGGCCTACACGCCTCATCCTC 60 Query 61 CTTATGGTTCTCACCGTCGTCATCACCATGATTGCCGCAGCTTATGGTTATTCCTCTGTC 120 || ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CTGATGGTTCTCACCGTCATCATCACCATGATTGCCGCAGCGTATGGTTATTCCTCTGTC 120 Query 121 TCGTCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACAACT 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TCATCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACCACT 180 Query 181 TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTCACAGATTCAGATTCTGCAGCTTAT 240 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 181 TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTTACAGATTCAGATTCTGCAGTTTAT 240 Query 241 GTTCGATGAACACAGGGCAGTACGTCAATTGATCTGAGttttatttttatatgttaacta 300 | ||||||||||||| |||||||||||||||||||||||| |||||||| | | ||| Sbjct 241 GATCGATGAACACAGTGCAGTACGTCAATTGATCTGAGTTCTATTTTTACA----A-CTA 295 Query 301 ttctttttc-tttttgatttt-GATGTAACGT--TCAAAATTAATGGACTGTTTTCCAAG 356 |||||||| ||||||||||| |||||||| | || |||||||||| |||||||||||| Sbjct 296 TTCTTTTTTATTTTTGATTTTTGATGTAACATAATCTAAATTAATGGCCTGTTTTCCAAG 355 Query 357 CAACCGTGAGAAAGGTATGCAGATATCGATTGTTTTCTAGTTATGTAAGATGAAATAATT 416 |||||||||||| |||||||||| ||||||||| | ||||||||||||||||||||| Sbjct 356 TAACCGTGAGAAAAGTATGCAGATTTCGATTGTTCAC--GTTATGTAAGATGAAATAATT 413 Query 417 AACAGAATTGTTGCGGTAGTTAT 439 |||||||||||||| |||||||| Sbjct 414 AACAGAATTGTTGCAGTAGTTAT 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16025347380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5