BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G12880.1

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488106 jgi|Araly1|488106|fgenesh2_kg.6__1240__AT5G12880.1         608    9e-174


> Ahg488106 jgi|Araly1|488106|fgenesh2_kg.6__1240__AT5G12880.1
Length=436

 Score =  608 bits (329),  Expect = 9e-174
 Identities = 407/443 (92%), Gaps = 11/443 (2%)
 Strand=Plus/Plus

Query  1    CATCAATCTCTCTTTTGCGATTCGAAGATGAGACGTTCATGGCCTACACGCCTCATCCTC  60
            ||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  1    CATCAATTTCTCTTGTGCGATTCGAAGATGAAACGTTTATGGCCTACACGCCTCATCCTC  60

Query  61   CTTATGGTTCTCACCGTCGTCATCACCATGATTGCCGCAGCTTATGGTTATTCCTCTGTC  120
            || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   CTGATGGTTCTCACCGTCATCATCACCATGATTGCCGCAGCGTATGGTTATTCCTCTGTC  120

Query  121  TCGTCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACAACT  180
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TCATCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACCACT  180

Query  181  TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTCACAGATTCAGATTCTGCAGCTTAT  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct  181  TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTTACAGATTCAGATTCTGCAGTTTAT  240

Query  241  GTTCGATGAACACAGGGCAGTACGTCAATTGATCTGAGttttatttttatatgttaacta  300
            | ||||||||||||| |||||||||||||||||||||||| |||||||| |    | |||
Sbjct  241  GATCGATGAACACAGTGCAGTACGTCAATTGATCTGAGTTCTATTTTTACA----A-CTA  295

Query  301  ttctttttc-tttttgatttt-GATGTAACGT--TCAAAATTAATGGACTGTTTTCCAAG  356
            ||||||||  ||||||||||| |||||||| |  || |||||||||| ||||||||||||
Sbjct  296  TTCTTTTTTATTTTTGATTTTTGATGTAACATAATCTAAATTAATGGCCTGTTTTCCAAG  355

Query  357  CAACCGTGAGAAAGGTATGCAGATATCGATTGTTTTCTAGTTATGTAAGATGAAATAATT  416
             |||||||||||| |||||||||| |||||||||  |  |||||||||||||||||||||
Sbjct  356  TAACCGTGAGAAAAGTATGCAGATTTCGATTGTTCAC--GTTATGTAAGATGAAATAATT  413

Query  417  AACAGAATTGTTGCGGTAGTTAT  439
            |||||||||||||| ||||||||
Sbjct  414  AACAGAATTGTTGCAGTAGTTAT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16025347380


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5