BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12890.1
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940749 jgi|Araly1|940749|scaffold_601293.1 2290 0.0
> Ahg940749 jgi|Araly1|940749|scaffold_601293.1
Length=1512
Score = 2290 bits (1240), Expect = 0.0
Identities = 1416/1501 (94%), Gaps = 11/1501 (1%)
Strand=Plus/Plus
Query 97 CTCGGCAATGGCGGAAGCTAAACCCAGAAATCTGAGAATCGTGATGTTCCCTTTCATGGG 156
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CTCTGCAATGGCGGACGCTAAACCCAGAAATCTGAGAATCGTGATGTTCCCTTTCATGGC 75
Query 157 ACAAGGCCATATCATCCCGTTTGTAGCTTTAGCCCTTCGTTTAGAGAAGATTATGATTAT 216
|||||||||||||||||| |||||||||||||||||||||||||| || | ||||| ||
Sbjct 76 ACAAGGCCATATCATCCCTTTTGTAGCTTTAGCCCTTCGTTTAGA-AA-A-GATGATGAT 132
Query 217 GAACAGAGCCAACAAAACCACCATCTCTATGATCAATACTCCTTCGAACATCCCCAAAAT 276
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 133 GAACAGAGCCAACAAAACCATCATCTCTATGATCAATACTCCTTTGAACATCCCCAAAAT 192
Query 277 ACGCTCCAATCTTCCACCTGAATCCTCCATAAGTCTCATAGAGTTACCTTTCAACAGCTC 336
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 193 ACGCTCCAATCTTCCTCCTGAATCCTCCATAAGCCTCATCGAGTTACCTTTCAACAGCTC 252
Query 337 TGATCATGGCCTTCCTCACGACGGCGAGAATTTCGATTCTCTTCCTTACTCTCTCGTCAT 396
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 253 CGATCACGGCCTTCCTCACGACGCCGAGAATTTCGATTCTCTTCCTTACTCTCTCGTCAT 312
Query 397 CAGCCTTCTTGAAGCTTCTAGGTCGCTTCGTGAGCCCTTTCGAGACTTCATGACGAAGAT 456
|||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||
Sbjct 313 CAGCCTTCTTGAAGCTTCTACGTCGCTTCGTGAGCCCTTTCGAGACCTGATGAAGAAGAT 372
Query 457 CTTGAAGGAAG-A-A-G--G-GCAGAGCTCGGTTATAGTGATCGGTGATTTCTTCTTGGG 510
||||||||||| | | | | ||||||||||||||| |||||||||||||||||||||||
Sbjct 373 CTTGAAGGAAGAAGATGATGAGCAGAGCTCGGTTATGGTGATCGGTGATTTCTTCTTGGG 432
Query 511 TTGGATCGGTAAGGTTTGCAAAGAGGTTGGTGTTTATTCAGTGATCTTTAGTGCTTCTGG 570
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 433 TTGGATCGGTAAGGTTTGCAAAGAGATTGGTGTTTATTCAGTGATCTTTAGTGCTTCTGG 492
Query 571 TGCTTTTGGTTTAGGTTGTTATAGATCCATATGGTTAAACTTGCCACATAAAGAAACCAA 630
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TGCTTTTGGGTTAGGTTGTTATAGATCCATATGGTTAAACTTGCCACATAAAGAAACCAA 552
Query 631 ACAAGATCAGTTTCTCTTAGATGATTTCCCTGAAGCAGGGGAGATTGAGAAAACTCAGTT 690
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 553 ACAAGATCAGTTTCTCTTAGATGATTTTCCAGAAGCAGGGGGGATTGAGAAAACTCAGTT 612
Query 691 GAATTCTTTCATGTTAGAAGCTGATGGAACCGATGATTGGTCTGTTTTCATGAAGAAGAT 750
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 613 GAATTCTTTCATGTTAGAAGCTGATGGAACGGATGACTGGTCGGTTTTCATGAAGAAGAC 672
Query 751 TATACCTGGATGGTCTGACTTCGATGGATTCTTGTTCAACACGGTTGCTGAAATCGATCA 810
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 673 TATACCTGGATGGTCTGATTTCGATGGATTCTTGTTCAACACGGTTGCGGAAATCGATCA 732
Query 811 GATGGGATTATCCTACTTCCGTAGAATAACCGGTGTTCCGGTTTGGCCAGTTGGGCCGGT 870
||| ||||| |||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 733 GATTGGATTGTCCTACTTCCGTAGAACAACCGGTGTTCCGGTTTGGCCTGTCGGGCCGGT 792
Query 871 TTTGAAGTCTCCGGATAAGAAGGTGGGATCGAGGTCGACAGAGGAAGCAGTGAAGTCATG 930
|||||| ||||| || |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 793 TTTGAATTCTCCTGACAAGAAGGTGGGATCAAGGTCGACAGAGGAAGCCGTGAAGGCATG 852
Query 931 GCTTGACTCAAAACCGGACCATTCGGTTGTGTACGTATGTTTCGGTTCAATGAACTCGAT 990
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 853 GCTTGACTCAAAACCGGACCATTCGGTTGTGTACGTATGTTTTGGTTCAATGAACTCGAT 912
Query 991 TTTGCAAACGCATATGTTAGAATTGGCTATGGCATTAGAGAGTAGCGAGAAGAACTTCAT 1050
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 913 TTTGCAAACGCATATGTTGGAATTGGCTATGGCATTAGAGAGTAGCGAGAAAAACTTCAT 972
Query 1051 ATGGGTGGTGAGGCCGCCCATAGGTGTGGAGGTGAAGAGTGAGTTTGATGTGAAAGGGTA 1110
|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 973 ATGGGTAGTGAGGCCGCCGATAGGAGTGGAGGTGAAGAGTGAGTTTGATGTGAAAGAGTA 1032
Query 1111 TCTACCGGAAGGATTTGAGGAAAGAATAACAAGATCGGAAAGAGGGTT-ACTTGTGAAGA 1169
|||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1033 TCTACCGGAAGGATTTGAGGAAAGAATAACAAGATCAGAAAGAGGGTTGA-TTGTGAAGA 1091
Query 1170 AATGGGCACCACAAGTTGATATATTGTCACACAAGGCAACATGTGTGTTTTTGAGTCATT 1229
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AATGGGCACCACAGGTTGATATATTGTCACACAAGGCAACATGTGTGTTTTTGAGTCATT 1151
Query 1230 GCGGATGGAACTCGATACTCGAATCACTTAGCCACGGTGTGCCACTGCTCGGATGGCCCA 1289
||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1152 GCGGATGGAACTCTATACTCGAATCGCTTAGCCACGGTGTGCCATTGCTCGGATGGCCTA 1211
Query 1290 TGGCAGCCGAGCAGTTCTTCAATTCCATATTGATGGAGAAACATATTGGGGTATCGGTTG 1349
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1212 TGGCAGCCGAGCAATTCTTCAATTCTATATTGATGGAGAAACATATTGGGGTATCGGTTG 1271
Query 1350 AGGTGGCGCGTGGGAAGAGATGTGAGATCAAATGTGATGACATTGTTTCTAAGATCAAAC 1409
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1272 AGGTGGCGCGTGGGAAGAGATGTGATATCAAATGTGATGAGATTGTTTCTAAGATCAAAT 1331
Query 1410 TGGTGATGGAGGAGACTGAAGTAGGGAAAGAGATTAGGAAGAAGGCTAGAGAGGTGAAGG 1469
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1332 TGGTGATGGAGGAGACTGAAGTAGGGAAAGAGATAAGGAAAAAGGCTAGAGAGGTGAAGG 1391
Query 1470 AGTTAGTGAGGAGAGCAATGGTAGATGGAGTTAAAGGTTCCTCCGTCATTGGTTTGGAAG 1529
| ||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||
Sbjct 1392 AACTAGTGAGGAGAGCAACGGAAGATGGAGTTAATGGTTCCTCTGTCATTGGTTTGGAAG 1451
Query 1530 AGTTTCTTGACCAAGCAATGGTCAAGAAAGTGGAGAATTGAGATAGTAGATGGTATATGT 1589
||||||||| |||||||| |||||||||| |||||||| ||| |||||||||| |||||
Sbjct 1452 AGTTTCTTGGTCAAGCAATTGTCAAGAAAGAGGAGAATTAAGACAGTAGATGGTTTATGT 1511
Query 1590 A 1590
|
Sbjct 1512 A 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61896648125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5