BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12900.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488108 jgi|Araly1|488108|fgenesh2_kg.6__1242__AT5G12900.1 3153 0.0
> Ahg488108 jgi|Araly1|488108|fgenesh2_kg.6__1242__AT5G12900.1
Length=2002
Score = 3153 bits (1707), Expect = 0.0
Identities = 1929/2031 (95%), Gaps = 36/2031 (2%)
Strand=Plus/Plus
Query 27 tctctctctctTCTTCACACACACAGAGACATCATCCTCTTCACACCCTTTTCTTTTGCA 86
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 1 TCTCTCTCTCTTCTTCACACACACAGAGACATCATCCTCATCACACCCTATTC-CTTGCA 59
Query 87 CAATCGCATTCACTAtctcttctctctcttttgtgtcacatccttctcttctcttctaag 146
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 60 CAATCGCATTCACTATCTCTTCTCTCTCTTTTGTGTCACATCCTTCTC-T-TC-TC---- 112
Query 147 ttctaatcttgtactatcttgtTCTACCATGGCTTCTTCTGAAACAAGAATGAACAAGGC 206
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 113 TTCTAATCTTG---T-TCTTGTTCTGCCATGGCTTCTTCTGAAACAAGAATGAACAAGGC 168
Query 207 AAGAGAAAAAGAAGAAGCCATAGCAAATGGAGTGAAGTTGAGAGCACTTCAAGCGAGTCT 266
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 169 AAGAGAAAAAGAAGAAGCCATAGCAAATGGAGTGAAGCTGAGAGCACTTCAAGCGAGTCT 228
Query 267 TATGCAGATGAAGTCAAGCCCATCTTCCAATTACAGTCTCAGAAACCCTTCTTCCTCTTC 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 TATGCAGATGAAGTCAAGCCCATCTTCCAATTACAGTCTCAGAAACCCTTCTTCTTCTTC 288
Query 327 TGCTGCTTCACCTGCTTCTCGTCCTCTCCCTAACCTCTCTGCTCATGATTACCCTGTTTT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TGCTGCTTCACCTGCTTCTCGTCCTCTCCCTAACCTCTCTGCTCATGATTACCCTGTTTT 348
Query 387 CACTCCTAGCTATGAAGATGAGCCTGTGTCTGCATTTCATCACAAGAATCTCACTTTATC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CACTCCTAGCTATGAAGATGAGCCTGTGTCTGCATTTCATCACAAGAATCTCACTTTATC 408
Query 447 TGAGACTTGGGATGAAGATGGTGTTGGTTTAGTAGATGGAGATACTTATCTCTCTGATTC 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TGAGACTTGGGATGAAGATGGTGTTGGTTTAGTAGATGGAGATACTTATCTCTCTGATTC 468
Query 507 TTACAAAACCTCAACTTCAAGAAAGACTGTGATGATGCCTCATCAAGATTCTCATCATCA 566
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 469 GTACAAAACCTCAACTTCAAGAAAGACTGTGATG---CCTAATCAAGATTCTCATCATCA 525
Query 567 TGTTTACACTATGTCGGACGCTCTCAGATCTCCACCGTTACATTTTTATACAACCGGTAG 626
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 526 TGTTTACACGATGTCGGACGCTCTCAGGTCTCCACCATTACATTTTTATACAACCGGTAG 585
Query 627 AAGCAACTGTGGCTCGGTCGACTTTAGATCGGTCTCTTCTTGCAATGACTACAATAAACA 686
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AAGCAACAATGGCTCGGTTGACTTTAGATCGGTCTCTTCTTGCAATGACTACAATAAACA 645
Query 687 AAAAGGTTTCGACACGAAGAGCTTGAAGAGCTCTAATCTTGTTGTGCCCTTGACGGATTC 746
|| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 AAGAGGTTTCGATACCAAGAGCTTGAAGAATTCTAATCTTGTTGTGCCCTTGACGGATTC 705
Query 747 GCACTCTGCTGTTGTTTCTTCTCAGCCAAGAAACCGTGGAGGTAGAGTAATGTCTTGGTT 806
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 706 GCACTCTGCTGTTGTTTCTTCTCAGCCAAGAAACCGTGGAGGAAGAGTGATGTCTTGGTT 765
Query 807 ATTCCCTAAGTTAAAGAAGAAA-CAAAAGAGTAATTCGATCTTTAATTCACCTAGTATAA 865
||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||| ||
Sbjct 766 ATTCCCTAAGTTAAAGA-GAAAGCAAAAGAGTAATTCAATCTTTAACTCACCTAGTAGAA 824
Query 866 CTGAGAAGTCAGAGGAAGTTTCTGAGGTGTTGAAGGATTCTGGTTCTGGTGTTGAGAAGT 925
||||||| |||||||||||||| ||||||||||||||||| ||| | | | |||||||
Sbjct 825 CTGAGAAATCAGAGGAAGTTTCCGAGGTGTTGAAGGATTCAGGT---G-T-T-GAGAAGT 878
Query 926 TGAAGAGAGAATTGATGGAAGCAAACAGAAGTAGGGATGCTGCGTTAACACAAGTCTCAG 985
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 TGAAAAGAGAATTGATGGAAGCAAACAGAAGTAGGGATGCTGCGTTAACACAAGTCTTAG 938
Query 986 AGATGAAATCTTCATTGGGAGAGTTAAGTGAGAAGCTTCAGTACTTGGAAAGTTACTGTG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGATGAAATCTTCATTGGGAGAGTTAAGTGAGAAGCTTCAGTACTTGGAAAGTTACTGTG 998
Query 1046 ACAATTTAAAGAAAGCTTTGAGAGAAGCAACAGAAGTAGTGTCACAGGAGAATAGTGGTG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 999 ACAATTTAAAGAAAGCTTTGAGAGAAGCAACAGAAGTAGTGTCACAGGAGAATAGTGTTG 1058
Query 1106 GAAGAAGCTCAGGGAAAAAGAACTCAGAGATGCCAGTGAGTGAAGAAGTGATGGTTGAAG 1165
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GAAGAAGCTCAGGGAAGAAGAACTCAGAGATGCCAGTGAGTGAAGAAGTGATGGTTGAAG 1118
Query 1166 GGTTCTTGCAGATTGTATCAGAAGCAAGATTATCGATAAAGCAGTTCTTGAAAACATTAG 1225
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1119 GGTTCTTGCAGATTGTATCGGAAGCAAGATTATCGATAAAGCAATTCTTGAAAACATTAG 1178
Query 1226 TTTCAGAGATTGATGAAGAAGACTCGACTCTAATTGGTAACATCAACACTCTCCTTCAAC 1285
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1179 TTTCAGAGATCGACGAAGAAGACTCTACTCTAATTGGTAACATCAACACTCTCCTTCAAC 1238
Query 1286 CTCACAACTTATCATTCACTTCTAAGTACTCCAAGATCATTCAGTACCACTTAGAAGCAA 1345
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1239 CCCACAACTTATCATTCACCTCTAAGTACTCCAAAATCATTCAGTACCACTTAGAAGCGA 1298
Query 1346 TCATAAGCCAATCAGTATACCAAGACTTTGAGAACTGCGTATTCCAGAAGAACGGTAAGC 1405
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1299 TCATAAGCCAATCAGTATACCAAGACTTTGAGAACTGCGTTTTCCAGAAGAACGGTAAGC 1358
Query 1406 CGAAACTGCTTGATCCGGAACAAGATCGACAAGCGAACTTCTCGTCCTTTGCTTCCTTGA 1465
|||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||
Sbjct 1359 CGAAACTGCTTGATCCGGAACAAGATAGACAAGCGAATTTCTCGTCATTTGCTTCTTTGA 1418
Query 1466 GAAACTTGAGCTGGAACGAGGTATTGAAAAAGGGTACAAAATACTACAGTGATGAGTTCA 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GAAACTTGAGCTGGAACGAGGTATTGAAAAAGGGTACAAAATACTACAGTGATGAGTTCA 1478
Query 1526 GTAGATTCTGCGATGAGAAGATGAGTTTGATCATTACAACATTGAATTGGACAAGACCTT 1585
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1479 GTAGATTCTGCGATGAGAAGATGAGTCTGATCATTACAACATTGAATTGGACAAGACCTT 1538
Query 1586 GGTCAGAACAAATGCTTCAAGCATTCTTTGTGGCTGCAAAATGTGTATGGTTGCTTCATT 1645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1539 GGTCAGAACAAATGCTTCAAGCATTCTTTGTGGCTGCAAAGTGTGTATGGTTGCTTCATT 1598
Query 1646 TGCTTGCCTTCTCGTTCAATCCAGCGTTAGGGATATTGAGAGTTGAGGAGAACAGAGAGT 1705
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1599 TGCTTGCCTTCTCGTTCAGTCCAGCGTTAGGGATCTTGAGAGTTGAGGAGAACAGAGAGT 1658
Query 1706 TTGAATCAAGTTTTATGGAAGATATGGGTGCAGATAGGCAGAGATCAGCATTGTCCCGTG 1765
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1659 TTGAATCGGGTTTTATGGAAGATATGGGTGCAGATAGGCAGAGATCAGCATCGTCCCGTG 1718
Query 1766 GACCGGCACGGGTTAAGGTTATGGTAATGCCTGGGTTTTATGTTTTAGATAGGGTTTTGA 1825
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1719 GACCGGCACGGGTTAAGGTTATGGTGATGCCTGGGTTTTATGTTCAAGATAGGGTTTTGA 1778
Query 1826 GATGTAAGGTTCTTTGCAGGTACAAGTCATTGGGCTGAACTGAAGAGAGTCACACTCACT 1885
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GATGTAAGGTCCTTTGCAGGTACAAGTCATTGGGCTGAACTGAAGAGAGTCACACTCACT 1838
Query 1886 CTAGTCTAATCAAAATTGATTGGTTCTTAATTAACTTTTCTTATTGTTAATCTCTTGTG- 1944
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1839 CTAGTCTAATCAAGATTGATTGCTTCTTAATTAACTTTTCTTATTGTTAATCTCTTGTGG 1898
Query 1945 TTTCTTCTACCTAGGCttttttttACTGGTCTTTTTACA-----CTTTGTTAAGAATTAT 1999
||||| ||||||||||| | || |||||||||| ||||||||||||| ||
Sbjct 1899 TTTCTA-TACCTAGGCTTC-----AGTGATCTTTTTACATTTGTCTTTGTTAAGAAT-AT 1951
Query 2000 TATAGGTTTTTAAATATTGTCAAATACTACTTGTCAAGGAGATTTTGTATT 2050
||||||||||||| | |||||||||| || |||||||||||||||||||||
Sbjct 1952 TATAGGTTTTTAATTTTTGTCAAATAGTAGTTGTCAAGGAGATTTTGTATT 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5