BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12910.1
Length=396
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940751 jgi|Araly1|940751|scaffold_601295.1 632 0.0
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 165 2e-40
Ahg940507 jgi|Araly1|940507|scaffold_601051.1 137 5e-32
> Ahg940751 jgi|Araly1|940751|scaffold_601295.1
Length=436
Score = 632 bits (342), Expect = 0.0
Identities = 378/396 (95%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGTTCGAACCAGACAGCTCGTAAGGCAACAGGAGGTAAGGCTCCACACTTCGCC 60
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 21 ATGGCTCGTTCCAAGCAGACAGCTCGTAAGTCAACAGGAGGTAAGGCTCCACACTTTGCC 80
Query 61 ATGAGAGTATGGCAACACTCAACTCCGCCGCTTAAGAAACCATATAGATACAAGCCAGGA 120
||||| ||| |||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 81 ATGAGGGTAAGGCAACACTCAACTCCGCTGCTTAAGAAGCCTTATAGATACAAGCCAGGA 140
Query 121 ACAGTGGCACTCAGGGAGATCAGGAAGTACCAGAAGACCACAGACTTAGTTATAAGAAAA 180
|||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 141 ACAGTGGCCCTCAGAGAGATTAGGAAGTACCAGAAGACCACAGACTTGGTTATAAGAAAA 200
Query 181 CTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTCAGAGTCTCAAGGCAGATCTAAGGTTC 240
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTCCCTTTCCAAAGATTGGTTAAAGAGATAGCTCAGAGTCTCAAGGCAGATCTAAGGTTC 260
Query 241 CAGACCGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAATGTTT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CAGACTGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAATGTTT 320
Query 301 GAGGACACCAATTTGTGTGCCATGCATGCCAAAAGATCAACTATCATGCCTAAGGATATC 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 321 GAGGACACCAATTTGTGTGCCCTGCATGCCAAAAGATCAACTATCATGCCTAAAGATATC 380
Query 361 CAGCTCGCTAAAAGGCTTCGAGGCGATAGGGTTTGA 396
||||||||||||||||||||||||||||||||||||
Sbjct 381 CAGCTCGCTAAAAGGCTTCGAGGCGATAGGGTTTGA 416
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 165 bits (89), Expect = 2e-40
Identities = 201/255 (79%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 118 GGAACAGTGGCACTCAGGGAGATCAGGAAGTACCAGAAGACCACAGA-CTTAGTTATAAG 176
||||| ||||| | || || ||||||||||| ||||||| ||| || ||| | || |
Sbjct 153 GGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGAGCTT-CTGATCCG 211
Query 177 AAAACTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTC-AGAGTCTCAAGGCAGATCTAA 235
||||| |||||||| || || |||| |||||| |||| ||| | ||||| | |||||
Sbjct 212 TAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACT-TCAAGACTGATCTCC 270
Query 236 GGTTCCAGACCGGTGCTGTTTCCGCTCTTCAAGAAGCCGCTGAAGCTTTTATGGTTGGAA 295
| ||||||| |||||||| | |||||||| ||||| |||||||||| | ||||||
Sbjct 271 GTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCTTACCTTGTTGGAC 330
Query 296 TGTTTGAGGACACCAAT-TTGTGTGCCATGCATGCCAAAAGA-TCAACTATCATGCCTAA 353
| ||||| ||||| ||| || ||||| || ||||| || ||| | ||||||||||||||
Sbjct 331 TCTTTGAAGACACTAATCTT-TGTGCTATTCATGCTAAGAGAGT-TACTATCATGCCTAA 388
Query 354 GGATATCCAGCTCGC 368
|||||||||||||||
Sbjct 389 GGATATCCAGCTCGC 403
> Ahg940507 jgi|Araly1|940507|scaffold_601051.1
Length=452
Score = 137 bits (74), Expect = 5e-32
Identities = 200/260 (77%), Gaps = 12/260 (5%)
Strand=Plus/Plus
Query 115 CCAGGAACAGTGGCAC-TCAGGGAGATCAGGAAGTACCAGAAGACCACAGA-CTTAGTTA 172
|||||||| || || | | || |||||||||||||||||||||| |||||| ||| | |
Sbjct 150 CCAGGAACTGTTGC-CTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAGAGCTT-CTGA 207
Query 173 TAAGAAAACTCCCTTTCCAAAGACTGGTGAAAGAGATAGCTCA-GAGTCTCAAGGCAGAT 231
| | || || |||||||| | ||||| ||||| ||||| || | ||||| | |||
Sbjct 208 TCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATTGCTCAGGA-TTTCAAGACGGAT 266
Query 232 CTAAGGTTCCAGACCGGTGCTGTTTCCGCTCTT-CAAGAAGCCGCTGAAGCTTTTATGGT 290
|| |||||||||| | |||| || | ||| || ||||| || ||||| |||| | ||
Sbjct 267 CTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGCTTACCTTGT 325
Query 291 TGGAATGTTTGAGGACACCAA-TTTGTGTGCCATGCATGCCAA-AAGATCAACTATCATG 348
||| ||||||| ||||| || || || || || || ||||| | | || |||||||||
Sbjct 326 TGGTTTGTTTGAAGACACTAACCTT-TGCGCGATTCACGCCAAGAGGGTC-ACTATCATG 383
Query 349 CCTAAGGATATCCAGCTCGC 368
||||||||||||||||||||
Sbjct 384 CCTAAGGATATCCAGCTCGC 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14193879108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5