BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12920.2
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325778 jgi|Araly1|325778|fgenesh1_pm.C_scaffold_6000998 1929 0.0
> Ahg325778 jgi|Araly1|325778|fgenesh1_pm.C_scaffold_6000998
Length=1470
Score = 1929 bits (1044), Expect = 0.0
Identities = 1143/1191 (96%), Gaps = 6/1191 (1%)
Strand=Plus/Plus
Query 532 GGTATATTC-TTAGTGTCTGTCACAAGATCAGGATGCTTGATGGTGCATGACTTTGAATC 590
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGTATATTCATT-GTGTCTGTCACAAGATCAGGATGCTTGATGGTGCATGACTTTGAATC 341
Query 591 TCTATATTGCCAGAGTAAGCTTGGCCCAGGTTCTGCGGAAGATGAAAGTAAGCATGTTGT 650
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 342 ACTATATTGCCAGAGTAAGGTTGGCCCAGGTTCTTTGGAAGATGAAAGTAAGCATGTTGT 401
Query 651 GCATTTCTCTTACCCTCCCGGTAGAGAATTTGATGTTGCTAGATGGAATCCTTCAAACCA 710
|||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 402 GCATTTTTCTTACCCTCCCGGAAGGGAATTCGATGTCGCTAGATGGAATCCTTCAAACCA 461
Query 711 GAATGAGGTAGCCTGTACATCAAGGAAACATGATCAAGTGCTTATCTTCGATATCAGTTA 770
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAATGAGGTAGCCTGCACATCGAGGAAACATGATCAAGTGCTTATCTTCGATATCAGTTA 521
Query 771 CATGTCTCCCAAACCAACTGAGGTATTGCAAACTAGACAGAAGCTATCGATTATTGGCCG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CATGTCTCCCAAACCAACTGAGGTATTGCAAACTAGACAGAAGCTATCGATTATTGGCCG 581
Query 831 CAAAATTTCTAGAGGTTTATCTGATGTTGCCATTACAAGTGATGAGGATTCGAGAATATT 890
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 582 CAAAGTTTCTAGAGGTTTATCTGATGTTGCCATGACTAGTGATGAGGATTCGAGAATATT 641
Query 891 TTCTCCAGATACACTTGGTATGGTTCATGTGTGGGATCGAAGAGCAGGAGTGTCTCCATG 950
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 642 TTCTCCAGATACACTTGGTATGGTTCATGTGTGGGATAGAAGAGCAGGAGTGTCTCCATG 701
Query 951 CATTGAACTTTCAACAGACAGATATGATTCGATCAAGAGTATTCAAATATATGTGGATAA 1010
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 702 CATTGAACTTTCAACAGACAGATATGATTCAATCAAGAGTATTCAAATATATGTGGATAA 761
Query 1011 TCAGACTATTTTTGGAGCTGGTAAAGAAGGAATCATTCATATCTGGGACCTTCGTGGAGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCAGACTATTTTTGGAGCTGGTAAAGAAGGAATCATTCATATCTGGGACCTTCGTGGAGG 821
Query 1071 AAGAAACTCTTCTGCTTTTCAGAGCCGCAAAGATGTAAGTCTTACAAGGGGCGAGCTGGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGAAACTCTTCTGCTTTTCAGAGCCGCAAAGATGTAAGTCTTACAAGGGGCGAGCTGGA 881
Query 1131 ATTGGCTATGGCAATGAGCCAATTGCCTTTAGCATCTCTACATCTTGCACCGAAGCTGCA 1190
||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 882 ATTGGCTATGGCAATGAGCCAGTTGCCTTTAGCATCTCTACATCTCGCACCGATGCTGCA 941
Query 1191 GAAAATTGCATCTCTTAAGGCACAGTCAGAAATCGTT-CCCAAGGAAATCCATTCCATTG 1249
||| ||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 942 GAAGATTGCATCTCTGAAGGCACAGTCAAAAATC-TTGCCCAAGGAAATCCATTCCATTA 1000
Query 1250 ATGTAAACCCATCCTCTCCTCATCAACTTGCATTTCACCTTGACGATGGTTGGTCCGGTG 1309
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATGTAAACCCGTCTTCTCCTCATCAACTTGCATTTCACCTTGACGATGGTTGGTCCGGTG 1060
Query 1310 TTCTTGACATATATAAATCTGAAGTTACTCATGTACATTGCCCTCCTCCAGCATGGTTGG 1369
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1061 TTTTTGACATATATAAATCTGAAGTTACTCATGTACATTGCCCTCCCCCAGCTTGGTTGG 1120
Query 1370 ATGGTTCCAACAGTTCAGCTGATTTAATCTTGCGGAAGCCATCATGGCTGCCAACATCAT 1429
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1121 ATGGTTCCGACAGTTCAGCTGATTTGATCTTGCGGAAACCATCATGGCTGCCAGCATCAT 1180
Query 1430 CTATTTATGTGGTTGGGTCCATGAGCGAGAAAGGGATTCATGTTCTTGATTTTCATCCAA 1489
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1181 CTATTTATGTTGTTGGGTCCATGAGCGAGAAAGGGATTCATGTTCTTGATTTCCATCCAA 1240
Query 1490 GCTCCAGGTCTCCTTGTCATGTTGACTACGATGAGGATACACAGAGAAATGAGAAGAGAG 1549
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1241 GCTCCAGGTCTCCTTGTCACGTTGACTACGATGAGGATACACAGAGAAACGAGAAGAGAG 1300
Query 1550 ACA-AGTGTAATCACAGAAACAAGTTTGTCTCATTGTCTGAAACTGTCACAGGTTGTGCT 1608
||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1301 ACAGA-TGTAATCACAGTAACAAGTTTGTTTCATTGTCTGAAACTGTCACAGGTTGTGCT 1359
Query 1609 GCGCATCCTCTCAACGGCATGATCGTAGCTGGAACTCAGAATTCGTCTTTGCTGTTGATC 1668
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1360 GCACATCCTCTCAACGGCATGATCGTAGCTGGAACTCAGAATTCGTCTTTGCTGGTGATC 1419
Query 1669 GCTCAGATGCATTGCTCATCTTCATCAGAAACTGCAGAAGGTGAATTGTAG 1719
|| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GCGCAGAGGCATTGCTCATCTTCATCAGAAACTGCAGAAGGTGAATTGTAG 1470
Score = 342 bits (185), Expect = 5e-93
Identities = 211/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 213 GCGACCATGGAAGCGATCTTTAATCGAAGTGAATGGACGATTGGATTCAGCGTACCGACA 272
||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 60 GCGGCCATGGAAGCGATCTTTAATCGAAGTGACTGGACGATTGGAGTCAGCTTACCGACA 119
Query 273 CGAACTCTATTCTCGAGTTGCTCATTCCTACTCGGAGATTGGGAAATTTTCACATTTTTA 332
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 120 CGAACTCTATTCTCTAGTTGCTCATTCCTACTTGGAGATTGGGAAGTTTTCACATTTTTA 179
Query 333 TCACTTGAACGAGAACCCATGTATAACCCATATGATGCAGATCCAAAGCCTATATCAATG 392
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||
Sbjct 180 TCACTTGAACGAGAACCCATGTATAACCCATATGAGGGAGATCCAACGCCTATATCATTG 239
Query 393 CCCGACAATGCGAGGTGTTGCAGGGCTTGATTTTGATAACCGGG 436
|||||||||||||||||||||||| || ||||||||||||||||
Sbjct 240 CCCGACAATGCGAGGTGTTGCAGGACTAGATTTTGATAACCGGG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5