BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12930.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940754 jgi|Araly1|940754|scaffold_601298.1 1901 0.0
> Ahg940754 jgi|Araly1|940754|scaffold_601298.1
Length=1369
Score = 1901 bits (1029), Expect = 0.0
Identities = 1251/1356 (92%), Gaps = 23/1356 (2%)
Strand=Plus/Plus
Query 73 TCCATGAATGAACCCGGTTCGGATCCGGATCCCGGGTCTTACCCAATTCCGCATGCTTCA 132
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 18 TCCATGGATGAACCCGGGTCGGATCCGGATCCCGGGTCTTACCCAATTCCGCCCGCTTCA 77
Query 133 GTCCATCTCGCCCCTTTCTTCTCTCCGTATACTCG-T-CGCCTC--TCTACTCACTTTAC 188
||||||||| |||| ||| | ||||| | | |||| | |||||| || |||||||| ||
Sbjct 78 GTCCATCTCACCCCCTTC-T-TCTCC-TCT-CTCGTTCCGCCTCTGTCAACTCACTTCAC 133
Query 189 CCGTCGTTGCCAGCCTCTACAATCGTCTCCCCCGCTAGCTTACATCTCTCTCCAGGGTTT 248
|||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 134 CCGTCGCTGTCAGCCACTACAATCCTCTCGGCCGCTAGCTTACATCTCTCTCCAGGGTTT 193
Query 249 ACTCGTCAATTCCGATGAAGCCAGCTCAGCGCGATCAATCGGCGGCGGATTGAGCAGAGA 308
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 194 ACTCGTCAATTCCGATGAAGCCAGCTCAGCGCGATCAATCGGCGGTGGATGGAGCCGAGA 253
Query 309 GGAATCCCTTGCGTGGGAGCTCTTCACGCCTTACCAAAGATTCCTGCTTGTGGCGGTCAT 368
|||| |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 254 GGAAGCCCTCGCGTGGGAGCTCTTCACGCCTTACCAGAGATTCCTGATTGTGGCGGTCAT 313
Query 369 TGGTGTCGCCGCCGCTCAGTCGAAGAAGAATGGTGTCATTCGTCAGCTCCAGAAATCAGT 428
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 314 TGGTGTCGCCGCCGCTGAGTCGAAGAAGAATGGTGTCATTCGACAGCTCCAGAAATCGGT 373
Query 429 TGATCTTAGGGATCAGCTTCTTTCAAGCATGCAACAAAAGCTTGATGATTTGTGTCATGA 488
|||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 374 TGATCTCAGGGATCAGGTTCTTTCAAGCATGCAACAAAAGCTTGATGATATGTGTCAAGA 433
Query 489 GCTAAATCTTGCCAAGGATCAGTCTGGAGCTGTATCAAAGGTCTCAGATCATGATTATCC 548
||||||||||| ||| |||||||||||| ||||||| ||||||| |||||||||| |||
Sbjct 434 GCTAAATCTTGTCAAAGATCAGTCTGGAACTGTATCCAAGGTCTTAGATCATGATGATCT 493
Query 549 AC-AGTCAGCTCTTAAAGAAAAGTTTGGATCTGAGAGGATTAATTTCGTAGATTGTGGCT 607
|| | ||| ||| ||||||||| ||||||||||||| ||||| ||| |||||||||||||
Sbjct 494 ACGA-TCAACTCCTAAAGAAAAATTTGGATCTGAGAAGATTACTTTTGTAGATTGTGGCT 552
Query 608 GCTGGCTATGTGATCAACATCATCACTCGTCACCTGCTGTACAGGATAAAGCTCCCACAA 667
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 553 GCTGGCTATGTGATCAGCATCATCACTCGTCACCTGCTATACAGGATAAAGCTCCCACAA 612
Query 668 ATCTGGTGCTTGATGCAGAGCCAGAGGAAAGGCGTATGTCTTACATGTCAGATTGGTGTT 727
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 613 ATCTGGTGGTTGATGCAGAGCCAGAGGAAAGGCGTATATCTTATATGTCAGATTGGTGTT 672
Query 728 CTAGTGTCACTTCTGCTGCAGAAACCCATTTTGATAGTCTTTCACTCGACCAAGACATGC 787
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 673 CTAGTGTCACTTCAGCTGCAGAAACCCATTTTGATAGTCTTTCGCTCGACCAAGACATGC 732
Query 788 TTTCCCTCAGAAAGGAGTGTCAAGAGAAAGATGCAACAATAAAGGACTTAACTTCATTTC 847
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 733 TTTCCCTCAGAAAGGAGTGTCAGGAGAAAGATGCAACAATAAAGGACTTAACTTCATTTC 792
Query 848 TTCAGCTGACCAACAAAGCTGGTTCAAAACGAGAAACAGAGCTTGAAGAGATTATTAGCA 907
|||||||||||||||||||||||||||| || ||||| ||||||||||| || ||| |||
Sbjct 793 TTCAGCTGACCAACAAAGCTGGTTCAAAGCGTGAAACGGAGCTTGAAGACATAATTCGCA 852
Query 908 GGaaaaaaaCGATAATTAAGAAGCTCAAGAGAGACGTAT-TGGTGTTAGAAGACAAGGTC 966
|||| || || |||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 853 GGAAGAAGACAATAATTAAGAAGCTCAAGAGAGACGT-TCTGGTGTTAGAAGAAAAGGTC 911
Query 967 ACACAGCTCACTAGGCTCCGGAGGTCCTCCTATTCACCTGCAGTCTCAAATACCCATGAG 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 ACACAGCTCACTAGGCTCCGGAGGTCCTCCTATTCACCTGCAGTCTCAAATACCCATGAA 971
Query 1027 TTCCCAATGAGAATGGATAATCTTCTTTATGATATGGATGTTCTTACAGCTTCTTCATCC 1086
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 972 TTCCCAATGAGAATGGATAATCTTCTTTATGATATGGATGTTCTTACAGCTACTTCATCC 1031
Query 1087 TCTGATTCAGAAGCTACTGTAAACACACCCC-AGCGAGCTGTGCTGGAGGCTCCAGTTGA 1145
||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||
Sbjct 1032 TCTGATTCAGAAGCTACTGTAGACACACCCCGA-CGGGCTGTGCTGGAGGCTCCAGTTGA 1090
Query 1146 TTCCGTAAAGGAGGAACCCGCAACTTTGGGACAAACCAATAAATCAGCGCCAGCTAAATC 1205
|||| |||||||||| | || || ||||||||||| ||||||||||||||||||||||
Sbjct 1091 TTCCATAAAGGAGGAGCTATCAGCTGTGGGACAAACCCATAAATCAGCGCCAGCTAAATC 1150
Query 1206 CTCGACGTCACTTGTGAAATCTGTAAAGCCGCCTTCAGTAGTTAGTCCATCGACTACTCG 1265
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1151 CTCGACGTCACTTGTAAAAACTGTAAAGCCTCCTTCAGTAGTTAGTCCATCGACTACTCG 1210
Query 1266 GAAGCCTGTTTCAGTTTCTTCTTC-T-T-C------AAGGGTGAGACGGGGTTCCTCTAC 1316
|||||||||||| ||||||||||| | | | |||| ||||||| ||||| |||||
Sbjct 1211 GAAGCCTGTTTCCGTTTCTTCTTCCTCTTCTTCTTCAAGGATGAGACGAGGTTCTTCTAC 1270
Query 1317 AGGTGATTCAAAGAAACCTAGAAGGCCAATTCAGACCATCCCAAGAGATTCCTCTGGTTC 1376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1271 AGGTGATTCAAAGAAACCTAGAAGGCCAATTCAGACCACCCCAAGAGATTCCTCTGGTTC 1330
Query 1377 ACATAAGAGATGGGTTTAATAAGTATTGGTCTGCTG 1412
|||||||||||||||||| ||||||||| |||||||
Sbjct 1331 ACATAAGAGATGGGTTTAGTAAGTATTGATCTGCTG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5