BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12940.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940755 jgi|Araly1|940755|scaffold_601299.1 1587 0.0
> Ahg940755 jgi|Araly1|940755|scaffold_601299.1
Length=1157
Score = 1587 bits (859), Expect = 0.0
Identities = 1056/1151 (92%), Gaps = 13/1151 (1%)
Strand=Plus/Plus
Query 49 CACACAAAAGATTCTCTACACTATGGATACTAAGAAATCGTTAGTGATCCTATTGA-CTA 107
||||| |||||| || || ||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1 CACAC-AAAGATCCTTTATACTATGGATACTAAGAAATCGGTAGTGATCCTATTGAGC-A 58
Query 108 ACGTCGTCGTCTT-CTTGCT-TCTCTCCACGACT-GTCCATTCTTGCTTACCGTCCGACC 164
||||| |||| || | | || | | ||||| | || || ||||||||||| ||||| |
Sbjct 59 ACGTCTTCGTGTTGC-TCCTAGC-CGCCACG-GTGGTTCAATCTTGCTTACCATCCGATC 115
Query 165 GAGCGGCGCTTCTAGAGTTCCGAGCAAAGCTCAACGAGCCCTACATTGGAGTTTTCAACA 224
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 116 GAGCGGCGCTTCTAGAGTTCCGGGCAAAGCTCAATGAGCCCTACATTGGAGTTTTCAACA 175
Query 225 CATGGAAAGGTCTAGACTGTTGCAAAGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 284
| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 176 CTTGGAAAGGCCAAGACTGTTGCAATGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 235
Query 285 GTCGAGTCGCCGGCATTACACTCCGAGGTGAATCCGAAGACCCGCTTTTCCAAAAGGCGA 344
||||||||||||||||||||||||| || ||||||||||| || |||| |||||||| |
Sbjct 236 GTCGAGTCGCCGGCATTACACTCCGTGGAGAATCCGAAGAACCTATTTTTCAAAAGGCAA 295
Query 345 AACGGAGCGGACTAATGACCGGCTCCATTTCGCCCTCTATATGTAAGCTCACTCGTCTCT 404
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 296 AACGGAGCGGGCTAATGACCGGCTCCATTTCGCCCTCCATATGTAAACTCACTCGTCTCT 355
Query 405 CCGGTATCATCATCGCTGATTGGAAGGGAATCTCCGGTGTGATTCCTAGTTGCATTGAGA 464
|||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 356 CCGGCATCATCATCGCCGATTGGAAGGGAATTTCCGGTGGGATTCCTAGTTGCGTTGAGA 415
Query 465 ATCTCCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAATTCTCCGGCGTGATTCCGG 524
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 ATCTTCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAAATCTCCGGCGTGATTCCGG 475
Query 525 CGAATATCGGGAAGTTACTGAGGCTTAAAGTGTTGAATCTAGCTGATAATCACTTATACG 584
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 476 CGAATATCGGGAAGTTACTGAGGCTGAAAGTGTTGAATCTCGCCGACAATCACTTATACG 535
Query 585 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATTTGGATCTCAGGAATA 644
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 536 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATCTGGATCTCAGGAATA 595
Query 645 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTCC 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTGC 655
Query 705 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGATTCTCTGACCCGGATATACCGGC 764
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 656 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGAATCTCTGACCCGGATCTACCGTC 715
Query 765 TCGCGGATCTTGAGCTCTCGATGAACCGACTCACCGGTCCGATTCCGGCTTCGTTCGGTA 824
|||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 716 TCGCGGATCTCGAACTCTCAATGAACCGAATCACCGGTCCGATTCCGGCTTCGTTCGGCA 775
Query 825 AAATGTCGGTGCTCGCGAC-TCTCAATCTCGATGGGAACTTGATCTCCGGT-ATGATTCC 882
|||||||||||||||| || | | || |||| || ||||| || ||||| | ||||||
Sbjct 776 AAATGTCGGTGCTCGCAACATTT-AACCTCGGCGGAAACTTAATTTCCGGCGA-GATTCC 833
Query 883 GGGGAGTCTATTGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAATCTTATAACCGG 942
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 834 GGGGAGTCTAATGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAACCTTATCCCCGG 893
Query 943 AAGTATACCTAACACGTTTGGACCGAGATCGTACTTCACGGTGCTGGATCTTGCGAACAA 1002
| | ||||| |||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 894 ACGGATACCAAACACGTTCGGGCCGAGATCGTACTTCACGGTGCTGGACCTCGCGAACAA 953
Query 1003 TCGTCTTCAGGGACCGATTCCGGCGAGTATCACGGCGGCGTCGTTTATTGGTCACCTTGA 1062
||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 954 TCGTCTTCAGGGACCAATTCCGACCAGTATCGCGGCGGCGTCGTTTATTGGTCACCTTGA 1013
Query 1063 CGTGAGCCATAACCATTTGTGTGGGAAGATTCCGATGGGATCTCCGTTTGATCATCTTGA 1122
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 1014 CGTGAGCCATAACCATCTGTGTGGGAAGATTCCGACGGGATCTCCTTTTGATCATCTCGA 1073
Query 1123 CGCGACGTCGTTTGCTTACAATGCTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1182
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGCGACGTCGTTTGCATACAATACTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1133
Query 1183 ATAATTAATTA 1193
|||||||||||
Sbjct 1134 ATAATTAATTA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5