BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G12940.1 Length=1293 Score E Sequences producing significant alignments: (Bits) Value Ahg940755 jgi|Araly1|940755|scaffold_601299.1 1587 0.0 > Ahg940755 jgi|Araly1|940755|scaffold_601299.1 Length=1157 Score = 1587 bits (859), Expect = 0.0 Identities = 1056/1151 (92%), Gaps = 13/1151 (1%) Strand=Plus/Plus Query 49 CACACAAAAGATTCTCTACACTATGGATACTAAGAAATCGTTAGTGATCCTATTGA-CTA 107 ||||| |||||| || || ||||||||||||||||||||| ||||||||||||||| | | Sbjct 1 CACAC-AAAGATCCTTTATACTATGGATACTAAGAAATCGGTAGTGATCCTATTGAGC-A 58 Query 108 ACGTCGTCGTCTT-CTTGCT-TCTCTCCACGACT-GTCCATTCTTGCTTACCGTCCGACC 164 ||||| |||| || | | || | | ||||| | || || ||||||||||| ||||| | Sbjct 59 ACGTCTTCGTGTTGC-TCCTAGC-CGCCACG-GTGGTTCAATCTTGCTTACCATCCGATC 115 Query 165 GAGCGGCGCTTCTAGAGTTCCGAGCAAAGCTCAACGAGCCCTACATTGGAGTTTTCAACA 224 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 116 GAGCGGCGCTTCTAGAGTTCCGGGCAAAGCTCAATGAGCCCTACATTGGAGTTTTCAACA 175 Query 225 CATGGAAAGGTCTAGACTGTTGCAAAGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 284 | |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 176 CTTGGAAAGGCCAAGACTGTTGCAATGGCTGGTATGGTGTGAGCTGCGATCCCAACACCC 235 Query 285 GTCGAGTCGCCGGCATTACACTCCGAGGTGAATCCGAAGACCCGCTTTTCCAAAAGGCGA 344 ||||||||||||||||||||||||| || ||||||||||| || |||| |||||||| | Sbjct 236 GTCGAGTCGCCGGCATTACACTCCGTGGAGAATCCGAAGAACCTATTTTTCAAAAGGCAA 295 Query 345 AACGGAGCGGACTAATGACCGGCTCCATTTCGCCCTCTATATGTAAGCTCACTCGTCTCT 404 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 296 AACGGAGCGGGCTAATGACCGGCTCCATTTCGCCCTCCATATGTAAACTCACTCGTCTCT 355 Query 405 CCGGTATCATCATCGCTGATTGGAAGGGAATCTCCGGTGTGATTCCTAGTTGCATTGAGA 464 |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||| Sbjct 356 CCGGCATCATCATCGCCGATTGGAAGGGAATTTCCGGTGGGATTCCTAGTTGCGTTGAGA 415 Query 465 ATCTCCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAATTCTCCGGCGTGATTCCGG 524 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 416 ATCTTCCTTTCTTGAGACATTTAGATCTCGTCGGAAATAAAATCTCCGGCGTGATTCCGG 475 Query 525 CGAATATCGGGAAGTTACTGAGGCTTAAAGTGTTGAATCTAGCTGATAATCACTTATACG 584 ||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||| Sbjct 476 CGAATATCGGGAAGTTACTGAGGCTGAAAGTGTTGAATCTCGCCGACAATCACTTATACG 535 Query 585 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATTTGGATCTCAGGAATA 644 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 536 GTGTGATTCCTCCGTCGATCACGAGATTAGTGAGTTTATCGCATCTGGATCTCAGGAATA 595 Query 645 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTCC 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 596 ACAATATCTCGGGAGTCATACCGCGAGATATTGGTCGTTTAAAGATGGTGAGTCGTGTGC 655 Query 705 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGATTCTCTGACCCGGATATACCGGC 764 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 656 TTTTAAGCGGTAACAAAATCTCGGGTCAAATACCCGAATCTCTGACCCGGATCTACCGTC 715 Query 765 TCGCGGATCTTGAGCTCTCGATGAACCGACTCACCGGTCCGATTCCGGCTTCGTTCGGTA 824 |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| | Sbjct 716 TCGCGGATCTCGAACTCTCAATGAACCGAATCACCGGTCCGATTCCGGCTTCGTTCGGCA 775 Query 825 AAATGTCGGTGCTCGCGAC-TCTCAATCTCGATGGGAACTTGATCTCCGGT-ATGATTCC 882 |||||||||||||||| || | | || |||| || ||||| || ||||| | |||||| Sbjct 776 AAATGTCGGTGCTCGCAACATTT-AACCTCGGCGGAAACTTAATTTCCGGCGA-GATTCC 833 Query 883 GGGGAGTCTATTGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAATCTTATAACCGG 942 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 834 GGGGAGTCTAATGGCATCATCGATCTCGAATTTGAATCTGAGCGGGAACCTTATCCCCGG 893 Query 943 AAGTATACCTAACACGTTTGGACCGAGATCGTACTTCACGGTGCTGGATCTTGCGAACAA 1002 | | ||||| |||||||| || |||||||||||||||||||||||||| || |||||||| Sbjct 894 ACGGATACCAAACACGTTCGGGCCGAGATCGTACTTCACGGTGCTGGACCTCGCGAACAA 953 Query 1003 TCGTCTTCAGGGACCGATTCCGGCGAGTATCACGGCGGCGTCGTTTATTGGTCACCTTGA 1062 ||||||||||||||| |||||| | |||||| |||||||||||||||||||||||||||| Sbjct 954 TCGTCTTCAGGGACCAATTCCGACCAGTATCGCGGCGGCGTCGTTTATTGGTCACCTTGA 1013 Query 1063 CGTGAGCCATAACCATTTGTGTGGGAAGATTCCGATGGGATCTCCGTTTGATCATCTTGA 1122 |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| || Sbjct 1014 CGTGAGCCATAACCATCTGTGTGGGAAGATTCCGACGGGATCTCCTTTTGATCATCTCGA 1073 Query 1123 CGCGACGTCGTTTGCTTACAATGCTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1182 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1074 TGCGACGTCGTTTGCATACAATACTTGTCTTTGTGGAAAGCCTCTTGGGAATTGTAAGAA 1133 Query 1183 ATAATTAATTA 1193 ||||||||||| Sbjct 1134 ATAATTAATTA 1144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48339858756 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5