BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12970.1
Length=2557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488114 jgi|Araly1|488114|fgenesh2_kg.6__1248__AT5G12970.1 4132 0.0
Ahg474270 jgi|Araly1|474270|fgenesh2_kg.1__4224__AT1G51570.1 876 0.0
Ahg940759 jgi|Araly1|940759|scaffold_601303.1 111 2e-23
> Ahg488114 jgi|Araly1|488114|fgenesh2_kg.6__1248__AT5G12970.1
Length=2535
Score = 4132 bits (2237), Expect = 0.0
Identities = 2439/2538 (96%), Gaps = 7/2538 (0%)
Strand=Plus/Plus
Query 1 CTCTTCTTCGCAATCTCATTTTTAACATTTTCACTTTCTTCTAAACTTTGCATTACAAAA 60
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 CTCTTCTTCGAAATCTCATTTTCAACATCTTCACTTTCTTCTAAACTTTGCATTACAAAA 60
Query 61 AACAATGTATTTCCAAGTT-GTTCTCTCTATTCTTCATTAGATCCCTTGAGAAGGGTTGT 119
|| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 61 AAGAATGTATTTCCAAGTTAGTT-TCTCTATTCTTCATTAGATCCCTTCAGAAGGGTTGT 119
Query 120 CTT-AGATAACAGAACCAAGCAGCTTCCCCTGAAACTGCTTCTTCTTACAAGTTCTTGGA 178
||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 CTTAAGGTAACAGAACCAAGCAGCTTCCCCTGAAACTGCTTCTTATTACAAGTTCTTGGA 179
Query 179 T-CTTTGCCATATAATTGCAAGAAGTTTTCAAGATTCAGACAAGATGCAGAAACCAGGGC 237
| ||||| | | |||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 180 TCCTTTGTAACAGAATTGC-AGAAGTTTTCAAGATTCAGACAAGATGCAGAAACCTGGCC 238
Query 238 AAAATATAGATTTTGCACTGAAGGAAACTTCACCAAAGATTGGTGCAGGTTCTGTGACAG 297
|||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 239 AAAATATAGAATTTGCACTGAAGGAGACTTCACCAAAGATTGGTGCAGGAGCAGTGACAG 298
Query 298 GTGATAAACTCTGCAGCACTTATGATTTGGTTGAGCAGATGCATTACCTCTACGTACGGG 357
|||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 GTGATAAACTCTCCTGCACTTATGATTTGGTTGAGCAGATGCATTACCTCTACGTTCGGG 358
Query 358 TCGTTAAGGCGAAGGAGTTACCGGGGAAAGATGTGACCGGTAGTTGTGATCCATATGTGG 417
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TAGTGAAGGCGAAGGAATTACCGGGGAAAGATGTGACCGGTAGTTGTGATCCATATGTGG 418
Query 418 AAGTGAAGCTCGGAAACTACAGAGGGATGACTAAGCATTTCGAGAAGAGGTCGAATCCGG 477
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 419 AAGTGAAGCTCGGAAACTACAGAGGGATGACTAAGCATTTTGAGAAGAAGTCGAATCCGG 478
Query 478 AGTGGAAGCAAGTGTTTGCGTTTTCAAAGGAGAGGATCCAAGCATCAATCTTGGAGGTTG 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 AGTGGAAGCAAGTGTTTGCGTTTTCAAAGGAGAGAATCCAAGCATCAATCTTGGAGGTTG 538
Query 538 TCGTTAAAGACAAAGATGTGGTGTTAGATGATTTGATTGGTAGAATCATGTTTGATCTCA 597
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 539 TAGTTAAAGACAAAGATGTGGTGTTGGATGATTTAATTGGTAGAATCATGTTTGATCTTA 598
Query 598 ATGAGATTCCTAAACGGGTACCGCCTGATAGTCCATTGGCTCCTCAGTGGTATAGGTTGG 657
||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 599 ATGAGATTCCTAAGCGAGTTCCGCCTGATAGTCCATTGGCTCCTCAGTGGTATAGGTTAG 658
Query 658 AGGATCGACATGGGCGTAAGGTTAAAGGAGAGCTTATGTTAGCTGTTTGGATGGGGACAC 717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGATCGACATGGGCGTAAAGTTAAAGGAGAGCTTATGTTAGCTGTTTGGATGGGGACAC 718
Query 718 AAGCAGATGAAGCTTTTTCTGATGCTTGGCATTCAGATGCAGCCACGGTCGGACCTGAGG 777
|||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 719 AAGCCGATGAAGCTTTCTCTGATGCTTGGCATTCAGATGCAGCCTCGGTTGGACCTGAAG 778
Query 778 GTGTGACACATATCCGTTCAAAGGTTTATCTTTCGCCAAAGCTTTGGTATGTCAGGGTCA 837
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 GTGTGACGCATATCCGTTCAAAGGTTTATCTTTCGCCAAAGCTTTGGTATGTGAGGGTCA 838
Query 838 ATGTAATTGAGGCTCAAGATTTGATACCTCATGATAAAACCAAGTTCCCTGAGGTTTACG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGTAATTGAGGCTCAAGATTTGATACCTCATGATAAAACCAAGTTCCCTGAGGTTTACG 898
Query 898 TGAAAGCAATGCTCGGAAACCAGACTCTGAGAACACGTATTTCTCAGACCAAAACATTGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAAAGCAATGCTCGGAAACCAGACTCTGAGAACACGTATTTCTCAGACCAAAACATTGA 958
Query 958 ATCCGATGTGGAATGAAGATCTGATGTTTGTTGTTGCTGAGCCTTTTGAGGAAG-CTTTG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 959 ATCCGATGTGGAATGAAGATCTGATGTTTGTTGTTGCTGAGCCTTTTGAGG-AGCCATTG 1017
Query 1017 ATTCTCGCGGTGGAAGATAGGGTTGCACCGAATAAAGATGAAACGTTAGGCCGGTGTGCA 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1018 ATTCTCGCGGTGGAAGATAGGGTTGCACCGAACAAAGATGAAACGTTAGGCAGGTGTGCA 1077
Query 1077 ATCCCGTTGCAGAACGTCCAAAGAAGGTTAGACCATAGGCCGCTTAACTCGAGGTGGTTC 1136
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATCCCGTTGCAGAATGTCCAAAGAAGGTTAGACCATAGGCCGCTTAACTCGAGGTGGTTC 1137
Query 1137 AACCTGGAGAAACATATTATGGTGGAAGGAGAGCAAAAAGAGATCAAATTCGCAAGCAGA 1196
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1138 AACCTGGAGAAACATATTATGGTGGAAGGAGAGAAAAAAGAGATCAAATTCGCAAGCAGG 1197
Query 1197 ATTCATCTAAGAATCTTTCTTGAAGGTGGGTACCATGTTCTTGATGAATCAACTCACTAC 1256
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 ATTCATCTAAGAATCTTTCTTGAAGGTGGATACCATGTTCTTGATGAATCAACTCACTAC 1257
Query 1257 AGCAGCGACCTAAGGCCAACCGCAAAACAGCTATGGAAACCGAGTATCGGACTGCTTGAA 1316
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1258 AGCAGCGACCTAAGGCCAACCGCAAAACAGCTATGGAAACCAAGCATCGGACTGCTTGAA 1317
Query 1317 GTAGGGATCATAAGTGCACACGGGCTGATGCCAATGAAGTCAAAAGACGGGAAGGGGACA 1376
||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 1318 GTAGGGATCATAAGTGCGCACGGACTGATGCCAATGAAGACAAAAGATGGGAAGGGGACA 1377
Query 1377 ACAGATGCATATTGCGTGGCTAAGTATGGGCAGAAATGGATTAGAACAAGAACAATCGTG 1436
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1378 ACAGATGCATATTGTGTGGCTAAGTATGGGCAGAAATGGATCAGAACAAGAACAATTGTC 1437
Query 1437 GATAGTTTTACGCCTAAATGGAATGAGCAGTACACATGGGAAGTGTTTGACACCTGCACT 1496
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1438 GATAGTTTTACGCCTAAATGGAACGAGCAGTACACATGGGAAGTGTTTGATACCTGCACT 1497
Query 1497 GTCATAACTTTTGGAGCATTCGACAACGGACACATTCCAGGCGGAAGCGGAAAAGACTTG 1556
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1498 GTCATAACTTTTGGAGCATTCGACAACGGACACATTCCAGGAGGAAGCGGAAAAGATTTG 1557
Query 1557 AGAATCGGGAAAGTGAGAATCCGGCTCTCTACCCTTGAAGCTGACCGTATCTACACTCAT 1616
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1558 AGAATCGGGAAAGTGAGAATCCGTCTCTCGACCCTTGAAGCTGACCGTATCTACACACAT 1617
Query 1617 TCATATCCGCTACTCGTCTTTCATCCTTCTGGGATCAAGAAGACAGGTGAAATACAGTTA 1676
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1618 TCATATCCGCTGCTCGTCTTTCATCCTTCCGGGATCAAGAAGACAGGTGAAATACAATTA 1677
Query 1677 GCTGTGCGGTTCACTTGCCTATCTCTCATCAACATGCTTCATATGTATTCTCAGCCATTA 1736
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GCCGTGCGGTTCACTTGCCTATCTCTCATCAACATGCTTCATATGTATTCTCAGCCATTA 1737
Query 1737 CTACCCAAAATGCATTACATCCATCCGTTATCGGTTCTCCAGCTGGACAGCCTGAGACAC 1796
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1738 CTACCCAAAATGCATTACATCCACCCGTTATCGGTTCTCCAGCTGGACAGCCTGCGACAC 1797
Query 1797 CAGGCGATGAACATTGTCTCGGCAAGGCTGAACCGCGCAGAGCCGCCTCTTCGCAAAGAG 1856
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1798 CAGGCGATGAACATTGTCTCGGCGAGGCTGAACCGCGCAGAGCCACCTCTTCGCAAAGAG 1857
Query 1857 ATTGTGGAGTACATGCTCGATGTTGACTCCCATATGTGGAGCATGAGGAGGAGTAAAGCT 1916
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATTGTAGAGTACATGCTCGATGTTGACTCCCATATGTGGAGCATGAGGAGGAGTAAAGCT 1917
Query 1917 AACTTCTTCAGAATCATGAATGTTCTGAGTGGTCTCATTGCTGTTGGAAAATGGTTTGAT 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AACTTCTTCAGAATCATGAATGTTCTGAGTGGTCTCATTGCTGTTGGAAAATGGTTTGAT 1977
Query 1977 CAGATCTGCAACTGGAGAAACCCAATAACCACAATTCTCATTCATGTTCTTTTCATTATC 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CAGATCTGCAACTGGAGAAACCCAATAACCACAATTCTCATTCATGTTCTTTTCATTATC 2037
Query 2037 TTAGTTCTTTACCCGGAATTAATCCTCCCAACGGTTTTCTTGTACCTTTTCTTGATTGGG 2096
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 2038 TTAGTTCTCTACCCGGAACTCATCCTCCCAACGGTTTTCTTGTACCTTTTCTTGATCGGG 2097
Query 2097 ATCTGGAATTTCCGGTGGAGACCAAGGCACCCGCCACACATGGACACACGGTTGTCCCAT 2156
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2098 ATCTGGAATTTCCGGTGGAGACCAAGGCACCCGCCACACATGGACACAAGGTTGTCCCAC 2157
Query 2157 GCAGACGCTGTTCACCCCGACGAGCTTGATGAAGAGTTTGATACTTTCCCGACTTCCCGA 2216
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2158 GCAGACGCTGTCCACCCCGATGAGCTTGATGAAGAGTTTGATACTTTCCCAACTTCCCGA 2217
Query 2217 TCCTCTGAGATTGTGCGGATGCGATATGACCGGCTCAGAAGCATAGGAGGACGGGTTCAG 2276
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2218 TCCTCTGAGATTGTGAGGATGCGATATGACCGGCTCAGAAGCATAGGGGGACGGGTTCAG 2277
Query 2277 ACCGTGATAGGCGATCTAGCAACACAGGGAGAGCGGTTTTTATCGCTGCTGAGCTGGAGA 2336
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2278 ACCGTGATAGGCGATCTAGCGACACAGGGAGAGCGGTTTTTATCGCTGCTGAGCTGGCGA 2337
Query 2337 GACCCGAGGGCAACCACATTGTTTGTGCTTTTCTGTCTCATAGCTGCTATCGTGTTGTAT 2396
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2338 GACCCGAGGGCAACCACATTGTTTGTGCTCTTCTGTCTCATAGCTGCTATCGTGTTGTAT 2397
Query 2397 GTTACGCCGTTTCAGGTTGTTGCACTTCTTGCTGGGATCTATGTGCTGAGGCATCCAAGG 2456
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GTTACACCGTTTCAGGTTGTTGCACTTCTTGCTGGGATCTATGTGCTGAGGCATCCAAGG 2457
Query 2457 TTCAGGCACAAGCTACCCTCTGTGCCGCTCAATCTCTTCAGGAGGCTACCTGCAAGATCT 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 TTCAGGCACAAGCTACCCTCTGTGCCGCTCAATCTCTTCAGGAGGCTACCTGCAAGATCT 2517
Query 2517 GACAGTCTATTATAGATA 2534
||||||||||| ||||||
Sbjct 2518 GACAGTCTATTGTAGATA 2535
> Ahg474270 jgi|Araly1|474270|fgenesh2_kg.1__4224__AT1G51570.1
Length=2457
Score = 876 bits (474), Expect = 0.0
Identities = 1716/2297 (75%), Gaps = 160/2297 (7%)
Strand=Plus/Plus
Query 314 CACTTATGATTTGGTTGAGCAGATGCATTACCTCTACGTACGGGTCGTTAAGGCGAAGGA 373
||| ||||| | || ||||| ||||| || ||||| || || ||||| ||||| || ||
Sbjct 90 CACATATGACCTCGTCGAGCAAATGCAGTATCTCTATGTTCGTGTCGTAAAGGCTAAAGA 149
Query 374 GTTACCGGGGAAAGA-TGTGACCGGTAGTTGTGATCCATATGTGGAAGTGAAGCTCGGAA 432
||||| || ||||| | | || ||||| ||||| || || || ||||| ||||| || |
Sbjct 150 TTTACCAGGTAAAGACT-TAACTGGTAGCTGTGACCCTTACGTCGAAGTTAAGCTTGGTA 208
Query 433 ACTACAGAGGGATGACTAAG-CATTTCGAGAAGAGGTCGAATCCGGAGTGGAAGCAAGTG 491
|||||||||| | ||| || ||||| ||||||| || ||||| |||||||| |||||
Sbjct 209 ACTACAGAGGAACCACT-AGACATTTTGAGAAGAAATCTAATCCTGAGTGGAACCAAGT- 266
Query 492 TTT-GCGTTTTC-AAAGGAGAGGATCCAAGCATC-AATCTTGGAGGTTGTCGTTAAAGAC 548
||| || ||||| ||| || ||| | ||||| || |||||| || | | || || ||
Sbjct 267 TTTCGCCTTTTCTAAA-GATAGGGTACAAGCTTCTTATCTTGAAGCTACT-GTCAAGGAT 324
Query 549 AAAGATGTGGTGT-TAGATGATTTGATTGGTAGAATCATGTTTGATCTCAATGAGATTCC 607
|||||| | || | |||||||||||||||| | | |||||||| | |||||||| ||
Sbjct 325 AAAGATTTAGT-TAAAGATGATTTGATTGGTCGTGTTGTGTTTGATTTGAATGAGATACC 383
Query 608 TAA-ACGGGTACCGCCTGATAGTCCATTGGCTCCTCAGTGGTATAGGTTGGAGGAT-CGA 665
||| | | || || ||||||||||| || ||||| || |||||||| || || ||| ||
Sbjct 384 TAAGA-GAGTTCCTCCTGATAGTCCTTTAGCTCCACAATGGTATAGATTAGAAGATGGGA 442
Query 666 CATGGGC-GTAAGGTTAAAGGAGAGCTTATGTTAGCTGTTTGGATGGGGACACAAGCAGA 724
| || | | || |||||||||||||||||||||||||||||| | || || ||||| ||
Sbjct 443 -AAGGCCAG-AAAGTTAAAGGAGAGCTTATGTTAGCTGTTTGGTTTGGTACTCAAGCTGA 500
Query 725 TGAAGCTTTTTCTGATGCTTGGCATTCAGATGCAGCCACGGTC-G-G-ACCTGAGGGTGT 781
||||||||| |||| |||||||| || ||||| || || || | | | |||| | | |
Sbjct 501 TGAAGCTTTCCCTGAAGCTTGGCACTCTGATGCTGCAACTGTTAGTGGAACTGATGCTTT 560
Query 782 -GAC-ACATATCCGTTCAAAGGTTTATCTTTCGCCAAAGCTTTGGTATGTCAGGGTCAAT 839
| | | | ||| | || ||||||||||| || || |||||||||||| | ||||| |||
Sbjct 561 AG-CTA-ACATCAGGTCTAAGGTTTATCTGTCTCCTAAGCTTTGGTATCTTAGGGTTAAT 618
Query 840 GTAATTGAGGCTCAAGATTTGATACCTCAT-GATAAAACCA-AGT-TCCCTGAGGTTTAC 896
|| ||||| ||||| ||||||||||| | |||||| | | | ||| ||| ||||
Sbjct 619 GTGATTGAAGCTCAGGATTTGATACCG-AGCGATAAAGGGAGA-TATCC-TGAAGTTTTT 675
Query 897 GTGAAAGCAATGCTCGGAAACCAGAC-TCTGAGAAC-ACGTATT-TCTCAGACCAAAAC- 952
||||||| || | ||||| ||| | | |||| || | | | | || || | || |
Sbjct 676 GTGAAAGTGATAATGGGAAATCAGGCAT-TGAGGACTA-G-AGTGTCACAAAGCAGGAGT 732
Query 953 ATTGAATCCGATGTGGAATGAAGATCTGATGTTTGTTGTTGCTGAGCCTTTTGAGGAAGC 1012
||| ||||||||||||||||| ||| ||||||||||||| |||||||| ||||| || ||
Sbjct 733 ATT-AATCCGATGTGGAATGAGGATTTGATGTTTGTTGTAGCTGAGCCGTTTGAAGA-GC 790
Query 1013 -TTTGATTCTC-GCGGTGGAAGATAGGGTTGCACCGAATAAAGATGAAA-CGTTAGGCCG 1069
||||||||| | | |||||||||| ||||||||||||||||||||| | || || |
Sbjct 791 CTTTGATTCTAAGTG-TGGAAGATAGAGTTGCACCGAATAAAGATGAAGTC-TTGGGGAG 848
Query 1070 GTGTGCAATCCCGTTGCAGAACGTCCA-AAGAAGGTTAGACCATAGGCCGCTTAACT-CG 1127
|| || | ||||||||| | | | || |||||| ||| |||| ||| | ||| |
Sbjct 849 ATGCGCGGTTCCGTTGCAGTATTTGGACAA-AAGGTTTGACTATAGACCGGTGAACAGC- 906
Query 1128 AGGTGGTTCAACCTGGAGAAACATATTATGGTGGAAGGAG-AGC-AA-AAAGAGATCAAA 1184
|||||||| ||||| ||||| ||| |||| ||||||||| || || ||||||||||||
Sbjct 907 AGGTGGTTTAACCTCGAGAAGCATGTTATAATGGAAGGAGGAGAGAAGAAAGAGATCAAA 966
Query 1185 TTCGCAAGCA-GAATTCATC-TAAGAATCTTTCTTG-AAGGTGGGTACCATGTTCTTGAT 1241
|| || |||| || |||| | | || |||| | ||| |||| || || ||||| ||||||
Sbjct 967 TTTGCCAGCAAGA-TTCA-CATGAGGATCTGT-TTGGAAGGAGGTTATCATGTGCTTGAT 1023
Query 1242 GAATCAACTCACTACAGCAGCGACCTAAGGCCAACCGCAAAACAGCTATGGAAACCGAGT 1301
||||| || || ||||| || ||||| || ||||| ||||| || |||||||| || |
Sbjct 1024 GAATCTACACATTACAGTAGTGACCTTAGACCAACTGCAAAGCAACTATGGAAGCCTAAC 1083
Query 1302 ATCGGACTGCTTGAAG-TAGGGATCATAAGTGCACACGGGCTGA-TGCCAATGAA-GTCA 1358
||||| | ||||| | ||||| || ||| ||| || || | | |||| ||||| | |
Sbjct 1084 ATCGGTGTTCTTGA-GCTAGGGGTCTTAAATGCG-ACTGGTTTAATGCCTATGAAAG-CT 1140
Query 1359 AAAGACGG-GA-AGGGGA-CAACAGATGCATATTGCGTGGCTAAGTATGGGCAGAAATGG 1415
||||| || | |||||| | || ||||| ||||| ||||| ||||||||||||||||||
Sbjct 1141 AAAGAAGGTGGTAGGGGAACCACGGATGCGTATTGTGTGGCAAAGTATGGGCAGAAATGG 1200
Query 1416 ATTAGAACAAGAACAATCGTGGATAGTTTTACGCCTAA-ATGGAATGAGCAGTACACATG 1474
|| ||||| | |||||| | || || ||||| || || |||||| ||||| || || ||
Sbjct 1201 ATCAGAACTCGGACAATCATTGACAGCTTTACCCC-AAGATGGAACGAGCAATATACTTG 1259
Query 1475 GGAAGTGTTT-GACACC-TGCACTGTCATAACTTTTGGAGCATTCGACAACGG--A-C-A 1528
|||||| ||| || || || ||||| | ||| |||| | ||||| ||| | | | |
Sbjct 1260 GGAAGT-TTTCGAT-CCGTGTACTGTTGTTACTGTTGGTGTGTTCGATAACTGCCATCTA 1317
Query 1529 CA---T--TC-CAGG--C---GGAAGCGGAAAAGACTTGA-GAATCGGGAAAGTGAGAAT 1576
|| | | || | ||| | |||||||| || | | || ||||| ||||| ||
Sbjct 1318 CACGGTGGTGACAAAAACAACGGAGGAGGAAAAGA-TTCAAGGATTGGGAAGGTGAGGAT 1376
Query 1577 CCGGCTCTCTACCCTTGAAGCTGACCGTA-TCTACACTCATTCATATCCGCTACTCGT-C 1634
|||||||||| || || ||||| || | ||||||| ||||||||||| ||| | || |
Sbjct 1377 AAGGCTCTCTACTCTCGAGGCTGATCG-AGTCTACACACATTCATATCCTCTATTGGTGC 1435
Query 1635 TTTCATCCTTCTGG-GATCAAGAAGACAGGTGAAATACAGTTAGCTGTGCGGTTCACTTG 1693
| |||||| ||| | ||||||| | || || || || ||||||||| |||| |||||
Sbjct 1436 TA-CATCCTAATGGAG-TCAAGAAAATGGGAGAGATTCACTTAGCTGTGAGGTTTACTTG 1493
Query 1694 C-CTATC-TCT-CATCAACATGCT-TCATATGTATTCTCAGCCAT-TACT-ACCCAAAAT 1747
| || || | | | |||||||| | | ||||||||||| ||| | | || ||| || ||
Sbjct 1494 CTCT-TCAT-TGC-TCAACATGATGT-ATATGTATTCTTTGCC-TCT-CTTACCGAAGAT 1547
Query 1748 GCATTACATCCATCCGT-T-ATCGGTTCTCCAGCTGGACAGCCTGAGACACCAGGCGA-T 1804
||| ||| ||||||| | | | ||||| |||||| || | | |||| || || |||| |
Sbjct 1548 GCACTACCTCCATCC-TCTCA-CGGTTAGCCAGCTTGATAACTTGAGGCATCAAGCGACT 1605
Query 1805 GAACATTGTCTCGGCAAGGCTGAAC-CGCGCAGAGCCGCCTCTTC-GCAAAGA-GATTGT 1861
| ||||| ||| ||||||| ||| || |||||||| ||| || | ||||| | ||||
Sbjct 1606 CAG-ATTGTGTCGACAAGGCT-AACACGTGCAGAGCCACCT-TTGAGGAAAGAAG-TTGT 1661
Query 1862 GGAGTACATGCTCGATGTTG-ACTCCCATATGTGGAGCATGAGGAGGAGTAAAGCTAACT 1920
||||| ||||| ||||| | | || || |||||||| ||| | || || || || || |
Sbjct 1662 TGAGTATATGCTTGATGTGGGA-TCTCACATGTGGAGTATGCGTAGAAGCAAGGCGAATT 1720
Query 1921 TCTTCAGAATCATGA-ATGTTCTGAGTGGTCTCATTGCTGTTGGAAAATGGTTTGATCAG 1979
||||||| || ||| | ||| ||||||| | || || || || ||||||||||| |||
Sbjct 1721 TCTTCAGGATAATGGGA-GTTTTGAGTGGGATAATCGCGGTAGGGAAATGGTTTGAACAG 1779
Query 1980 ATCTGCA-ACTGGAGAAACCCAATAACCACAATTCTCATTCATGTTCTTTTCATTATC-T 2037
||||| | |||| ||| || ||||| || || | || || |||| ||||||||| |
Sbjct 1780 ATCTGTGTA-TGGAAAAATCCGATAACAACGGTTTTAATCCACATTCTGTTCATTATCCT 1838
Query 2038 TAGTTCTTTA-CCCG-GAATTAATCCT-CCCAACGGTTTTCTTGTACCTTTTCTTGATTG 2094
| ||| | || |||| | ||| || | |||| | ||||| | ||||| ||||||||||
Sbjct 1839 T-GTTATCTATCCCGAGC-TTA-TCTTGCCCACCA-TTTTCCTCTACCTCTTCTTGATTG 1894
Query 2095 G-GATCTGGAATT-TCCGGTGGAGACCAAGGCACCCGCCACACATGGACACACGGT-TGT 2151
| | | ||| | | || | ||||| || || || || || |||||||||||||| | | |
Sbjct 1895 GAGTT-TGGTACTATC-GTTGGAGGCCGAGACATCCTCCTCACATGGACACACG-TCTCT 1951
Query 2152 CCCATGCAGACGCTGTTCACCCCGACGAGCTTGATGAAGAGTTTGATACTTTCCCGACTT 2211
| || |||||| | | ||||| || ||||| || || |||||||| ||||| || ||||
Sbjct 1952 CACACGCAGACTCAGCACACCCTGATGAGCTCGACGAGGAGTTTGACACTTTTCCTACTT 2011
Query 2212 CCCGATCC-TCTGAGATTGTGC-GGATGCGATATGACCGGCTCAGAAGCATAGGAGG-AC 2268
||||| || || || || || | ||||| |||||||| | ||||||||||| | || |
Sbjct 2012 CCCGA-CCATCAGACATCGT-CAGGATGAGATATGACAGACTCAGAAGCATTGCTGGTA- 2068
Query 2269 GGGTTCAGACCGT-GATAGGCGATCTAGCAACACAGGGAGAGCGGTTTTTA-TCGCTGCT 2326
|| |||| || || | | || ||||| ||||| || |||||| | || | ||| ||||
Sbjct 2069 GGATTCAAACAGTTGTT-GGTGATCTTGCAACTCAAGGAGAGAGATTCC-AGTCGTTGCT 2126
Query 2327 GAGCTGGAGAGACCCGAGGGCAACCACAT-TGTTTGTGCTT-TTCTGTCTCATAGCTGCT 2384
|||||| | ||||| | || || | | | || || ||| |||||||| ||||||||
Sbjct 2127 AAGCTGGCGTGACCCTCGTGCTACTGC-TCTCTTCGT-CTTGTTCTGTCTGATAGCTGCG 2184
Query 2385 ATCGTGT-TGTATGTTACGCCGTTTCAGGTTGTTGCACTTCTTGCTGGGATCTATGTGCT 2443
| || | ||||||| || || ||||||||||| || ||||| ||| | ||||||||
Sbjct 2185 GTGGT-TCTGTATGTAACTCCCTTTCAGGTTGTGGCTTTTCTTATTGGCTTGTATGTGCT 2243
Query 2444 GAGGCATCCAAGGTTCAGGCACAAGCTACCC-TCTGTGCCGCTCAATCT-CTTCAGGAGG 2501
|| || || ||| ||||| ||||||| ||| || || || || || || |||||||||
Sbjct 2244 TAGACACCCGAGGCTCAGGTACAAGCT-CCCATCAGTTCCTCTTAA-CTTCTTCAGGAGA 2301
Query 2502 CTACCTGCAAGATCTGA 2518
|| || |||||| ||||
Sbjct 2302 CTTCCAGCAAGAACTGA 2318
> Ahg940759 jgi|Araly1|940759|scaffold_601303.1
Length=281
Score = 111 bits (60), Expect = 2e-23
Identities = 67/70 (96%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 1857 ATTGT-GGAGTACATGCTCGATGTTGACTCCCATATGTGGAGCATGAGGAGGAGTAAAGC 1915
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 46 ATTGTAGG-GTACATGCTCGATGTTGACTCCCACATGTGGAGCATGAGGAGGAGTAAAGC 104
Query 1916 TAACTTCTTC 1925
||||||||||
Sbjct 105 TAACTTCTTC 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96406410095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5