BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12980.1
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940762 jgi|Araly1|940762|scaffold_601306.1 1496 0.0
Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1 368 5e-101
> Ahg940762 jgi|Araly1|940762|scaffold_601306.1
Length=970
Score = 1496 bits (810), Expect = 0.0
Identities = 915/964 (95%), Gaps = 13/964 (1%)
Strand=Plus/Plus
Query 41 CTCT-AATGGCTAATCTTCCTCCTCCGCTCTCCATGAAATCTGTCGCCCTCTCAGGAGCT 99
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 18 CTCTAAATGGCTAATCTTCCTCCTTCGCTCTCCATGAAATCTGTCGCTCTCTCAGGAG-- 75
Query 100 TCTTCTCCTTCTTCTTCCTCCAACAACGATCGGAAGCTATCATCGGCGGAGCAGTTAATT 159
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 76 -------CTTCTTCTTCCTCCAGCAACGATCGGAAGCTATTATCGGCGGAGCAGTTGATT 128
Query 160 CTCGATCTCAGCAATCCCGAACTCAGAGAAAATGCACTTCACGAGTTGTCTAAGAAGAGA 219
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 129 CTCGATCTCAGCAATCCCGAACTCAGGGAAAATGCTCTTCACGAGTTGTCCAAGAAGAGA 188
Query 220 GAGATCTTTCAAGATTTGGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTT 279
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 189 GAGATCTTTCAAGATTTGGCGCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTT 248
Query 280 CTACAGGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCTCAA 339
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 249 CTACAGGAGATTATCTCAGTTTACCCTGTCCTATCTCCTCCAACCATGACTCCTGCTCAA 308
Query 340 TCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAGTGTGTTGCTTCTCATACTGATACG 399
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 309 TCAAACAGGGTCTGCAATGCACTTGCGCTTCTTCAGTGTGTTGCTTCTCATACTGATACG 368
Query 400 AGAATGTTGTTCCTAAAAGCCCATCTGCCATTGTACCTGTATGCTTTCTTGAATACATCA 459
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGGATGTTGTTCTTGAAAGCCCATCTGCCATTGTACCTGTATGCTTTCTTGAATACATCA 428
Query 460 AGCAAATCAAGACCGTTTGAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTT 519
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 429 AGCAAGTCAAGACCGTTTGAGTACCTGCGACTGACTAGCCTGGGGGTTATTGGTGCACTT 488
Query 520 GTTAAGGTTGATGATACTGAAGTGATCAGATTCCTTCTTCAAACTGAGATTGTCCCATTG 579
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 489 GTTAAGGTTGATGATACTGAAGTGATAAGATTCCTTCTTCAAACTGAAATTGTCCCATTG 548
Query 580 TGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACTGTTGCTACTTTCATTGTT 639
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 549 TGCCTCCGGACAATGGAAAATGGCAGCGAGTTATCAAAGACCGTTGCTACTTTCATTGTT 608
Query 640 CAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTC 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 609 CAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACCACAGCGGAAAGATTC 668
Query 700 TTTGCTCTGGGTCGGGTTTTGGGAAATATGGTTACTTCACTTGCAGAAGGACCGTC-CGC 758
|||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 669 TTTGCTCTGGGTCGGGTTTTGGGAAATATGGTTACTTCACTTGCAGAAGGGCCATCTC-C 727
Query 759 TAGGCTACTAAAGCACATCATACGCTGCTATCTTCGCTTGACAGATAACCCCAGAGCATG 818
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 728 TAGGCTACTAAAGCACATCATACGCTGCTATCTCCGTTTGACAGATAACCCCAGAGCATG 787
Query 819 CGATGCACTTGGAAGTTGCCTTCCAGATCTTCTGAGGGATGCTACTTTCAGTGGTTGTCT 878
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 788 CGATGCACTTGGAAGTTGCCTTCCAGATCTTCTGAGGGATGCTACCTTCAGCGGTTGTCT 847
Query 879 CTATGATGACCCACCTGCAATGCAATGGCTGCAGCAACTGCTCCACAACGTTAACGTTGG 938
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 848 CTATGATGATCCACCTGCAATGCAATGGCTGCAGCAACTGCTCCACAACATTAAGGTTGG 907
Query 939 CGGGAGAGCACCTCAAGGGTTGGCTCATATGTTTGTGAATTAAATCGAACCCTTATAGTC 998
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 908 CGGGAGAGCACCTCAAGGGTTGGCTCATATGTTTGTGAATTAAATCAAACCCT-ATAGTC 966
Query 999 TGGG 1002
||||
Sbjct 967 TGGG 970
> Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1
Length=1224
Score = 368 bits (199), Expect = 5e-101
Identities = 559/729 (77%), Gaps = 40/729 (5%)
Strand=Plus/Plus
Query 119 CCAACAACGATCGGAAGCTATCATCGGCGGAGCAGTTAATTCTCGATCTCAGCAATCCCG 178
||||||| ||||| || | | || || |||||||| | |||||||||||||||||||
Sbjct 97 CCAACAAAGATCGCAATTTGGCCTCTGCTGAGCAGTTGGTACTCGATCTCAGCAATCCCG 156
Query 179 AACTCAGAGAAAATGCACTTCACGAG-TTGTCTAAGAAGAGAGAGATC-TTTCAAGATTT 236
|||||||||| ||||| |||| |||| || || ||||| ||||| || ||||| ||| |
Sbjct 157 AACTCAGAGAGAATGCTCTTCTCGAGCTT-TCCAAGAAAAGAGA-ATTGTTTCAGGATCT 214
Query 237 GGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTTCTA-CAGGAGAT--TAT 293
||| || || || ||| | ||| ||||||| ||| ||||| || | |||||||| |||
Sbjct 215 GGCGCCTCTGTTGTGGAACTCTTTTGGTACAATTGCTGCT-TTGTTGCAGGAGATAGTAT 273
Query 294 CGCAGTTTACCCTGCCCTAT-CTCCTCCAAC-CATGACTCCTGCTCAATCTAACAGGGTG 351
| | | ||| ||| || | | ||||||| | ||||||||||||| || ||| | ||
Sbjct 274 CA-A-TCTACTCTGTTCT-TGCACCTCCAAATC-TGACTCCTGCTCAGTCCAACCGTGTT 329
Query 352 TGCAA-TGCACTTGCTCTTCTTCAGTGTGTTGCTTCTCATACTGATACGAGAATGTTGTT 410
||||| | | || || ||||||||||| || || |||||| |||| ||||||||||| ||
Sbjct 330 TGCAACT-CGCTCGCCCTTCTTCAGTGCGTAGCATCTCATTCTGACACGAGAATGTTATT 388
Query 411 CCTAAAAGCCCATCTGCCATTGTACCTGTATGCTTTC-TTGAATACATCAAGCAAATCAA 469
|| || || ||| | ||||||||||| ||| | ||| || |||||| | || || ||||
Sbjct 389 TCTCAAGGCTCATATCCCATTGTACCTTTATCCCTTCCTT-AATACAACGAGTAAGTCAA 447
Query 470 GACCGTTT-GAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTTGTTAAGGTT 528
|||| ||| || ||| ||||||| |||||||| || || |||||||||||||| ||||||
Sbjct 448 GACC-TTTCGAATACTTGCGGCTTACTAGCTTAGGTGTCATTGGTGCACTTGTGAAGGTT 506
Query 529 GATGATACTGAAGTGATCAGATTCCTTCTT-CAAACTGAGATTGTCCCATTGTGCCTCCG 587
|||||||| || || || || ||||| ||| ||| |||| ||| | || ||||||||||
Sbjct 507 GATGATACAGAGGTCATTAGCTTCCTACTTTCAA-CTGAAATTATTCCGCTGTGCCTCCG 565
Query 588 GACAATGGAGAATGGC-AGCGAGTTATCAAAGACTGTTGCTAC-TTTCATTGTTCAGAAA 645
|| ||||| ||||| || ||| | ||||| || || || || ||| |||||||| |||
Sbjct 566 TACCATGGA-AATGGGGAGTGAGCTGTCAAAAACAGTGGCAACATTT-ATTGTTCA-AAA 622
Query 646 G-TTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGC 704
| ||||| |||| ||||| ||| | || ||||| ||||| ||||| ||| | || |||||
Sbjct 623 GATTTTGTTGGATGATGTGGGGATGGATTACATCTGCACAACAGCAGAGCGGTTTTTTGC 682
Query 705 TCTGGGTCGGGTTTTGGGAAATATGGTT-ACTTCACTTGCAGAAGGA-CCGTC-C-GCTA 760
| ||||| || ||||| || |||||| | | |||||| || | | || || | ||
Sbjct 683 AGTTGGTCGAGTGTTGGGCAACATGGTTCAGT-CACTTGTGGA-GCAGCCTTCTCCGC-- 738
Query 761 GGCTACTAAAGCACATCATACGCTGCTATCTTCG-CT-TGACAGATAACCCCAGAGCATG 818
|||| | ||||| ||||| || |||||||| || || | |||| ||||| || || ||
Sbjct 739 GGCTTTTGAAGCATATCATTCGTTGCTATCTCCGTCTAT--CAGACAACCCAAGGGCTTG 796
Query 819 CGATGCACT 827
| ||||||
Sbjct 797 TGCTGCACT 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43269510795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5